Sequence
atgc intronic sequence ATGC exonic sequencegtaagatagtttggaaataattgttggaaaattttttgctaacttgatttgtttaaatgtctcttacagttgtagacttctgtttttgtagGTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTACTGCTTAGTTCAGTTTTATACTGTTACAAAGGATGAATTGGAGCACATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G00250.1 (Glycine max), 3'ss of exon 4
-gtaagatagtttggaaataattgttggaaaattttt----tgctaacttgatttgtttaaat-gtctcttacagttgtagacttctgtt---tttgtagGTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTACTGCTTAGTTCAGTTTTATACTGTTACAAAGGATGAATTGGAGCACATA
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ggtatcttcattttaaggtttgtgttattatgctgttctagtgataggtaaaagttctcaagttatatctgactgcatgagctatctggtacatttgtagGTATCCTTATATGGCAGTGGTTCTAAATTTCAGTCAGTCATGGGCTTTGTACTGCCTTGTTCAATTTTATACAGTTACAAAGGACGAACTGGCTCATATA
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA06G00300.1 (Glycine max), 3'ss of exon 4
-gtaagatagtttggaaataattgttggaaaattttt----tgctaacttgatttgtttaaat-gtctcttacagttgtagacttctgtt---tttgtagGTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTACTGCTTAGTTCAGTTTTATACTGTTACAAAGGATGAATTGGAGCACATA
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ggtatcttcattttaagatttgtgttattatgctgttctagtgacaggtaaaagttttgaagttatatctgactgcttgagctatctggtacatttgtagGTATCCTTATATGGCAGTGGTTCTGAATTTCAGTCAGTCATGGGCTTTGTACTGCCTAGTTCAATTTTATACAGTTACAAAGGAAGAACTGGCTCATATA
upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G38360.2 (Arabidopsis thaliana), 3'ss of exon 5
------------------------------------gta-agatag---tttggaaataattgttggaaa-attttttgctaact-tgatttgtttaaatgtctcttacagttgtagacttctgtttttgtagGTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTACTGCTTAGTTCAGTTTTATACTGTTACAAAGGATGAATTGGAGCACATA
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gtacgttgagacaattttgacaagaacagtgctaacatacagattgaccttaagaaacgaaaatcagtttcatctatgatggactgtgatcaagatagcagcatcttaccattgt----tttcttttttgtagGTACCCTTATTTGGCAGTTGTTCTAAATTTTAGTCAGTCATGGGCATTATACTGTCTGGTTCAGTTCTATGGTGCAACGAAAGATGAGCTTGCACACATCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161716138|gb|FC068057.1|FC068057EST: CTTGAAGCCTTCAGCTTGTATTGTGAAGGCGACTTTAAATGGGGATGTGG GTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTA
genomic: CTTGAAGCCTTCAGCTTGTATTGTGAAGGCGACTTTAAATGGGGATGTGGgtaagatagt ... gtttttgtagGTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgctaacttgatttgtttaaatgtctcttacagttgtagacttctgtttttgtagGTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTACTGCTTAGTTCAGTTTTATACTGTTACAAAGGATGAATTGGAGCACATA
cttctgttttt CT-rich tract
ttgatttgtttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagatagtttggaaataattgttggaaaattttttgctaacttgatttgtttaaatgtctcttacagttgtagacttctgtttttgtagGTATCCTTACATAGCAGTGGTTCTAAATTTCAGTCAATCATGGGCTCTGTACTGCTTAGTTCAGTTTTATACTGTTACAAAGGATGAATTGGAGCACATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA