Sequence
atgc intronic sequence ATGC exonic sequencegttgaggtacaaacagttgaaacttagttttgtgatcatatatctttttgtgtatccatacctgttgcattttttttccatccattctaggctctaattttcattcaaatgagGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g03030.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G53470.1 (Arabidopsis thaliana), 3'ss of exon 3
gttgaggtacaaacagttgaaacttagttttgtgatcatatatctttttgtgtatccatacctgttgcattttttttccatccattctaggctctaattttc-attcaaatgagGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC------
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--------------------------gtttgtcccttgaaactctgtttctgtttttttacccgtcgttatgcatcaaaacttaaagaaagagctaatcctctgttttttttatgtatagATGATTGTGGAAGAGATGAACATTTTGACTACTGTCTTTCTTCGATTTGATAATCAGAAGATTGTATATCCAAACAGTCTTCTCGGAACAAAACCTATCG
upper sequence: Vv03s0038g03030.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G78610.1 (Arabidopsis thaliana), 3'ss of exon 3
gttgaggtacaaacagttgaaacttagttttgtgatcatatatctttttgtgtatccatacctgttgcattttttttccatccattctaggctctaattttcattcaaatg--agGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC------
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-------------------------------------------------gtaacttcaaaaaactagtaactaatagttctcatttttcaattctaatgtttaaaaaacttcttgtttcagATGGTTGTGGAAGAGATGAACATATTGACAACAGTTTTCTTGAGATTTGATAACCAGAAAGTCGTGTACCCGAACAGTCTTCTCTGGACTAAATCCATCG
upper sequence: Vv03s0038g03030.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ33329 (Selaginella moellendorffii), 3'ss of exon 2
gttgaggtacaaacagttgaaacttagttttgtgatcatatatctttttgtgtatccatacctgttgcattttttttccatccattctaggctctaattttcattcaaatgagGTT-CAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC------
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-----------------------------------------------------gtctggaatgaattccttgtttttgccttgactggatctcatgatcttcg--caaatgcgaatgcagATGGTGGTGGAAGAGATGAACATCCTGACCACCGTCTTCCTCCGCTACGACAACGAGAAGATCTACTACCCGAATTCCGTGCTGGCGACCAAACCGATCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacctgttgcattttttttccatccattctaggctctaattttcattcaaatgagGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC
ctctaat putative branch site (score: 3)
ttttcattc CT-rich tract
taattttcattcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgaggtacaaacagttgaaacttagttttgtgatcatatatctttttgtgtatccatacctgttgcattttttttccatccattctaggctctaattttcattcaaatgagGTTCAGATGGTAGTGGAAGAGATGAACATCTTGACTACTGTCTTTCTAAGAGCCGACAACATGAAGATCGTGTTCCCAAACAGCACTCTTGCTACAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA