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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 6
---------------------------------gtgagttttttaggaggtg-gtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
                                 |  | ||  |    | |||  | || ||| | || ||    |     || ||||| | | ||  |  |  ||  |       || | | || |  |  || || |||| ||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||||| || || |||||||||||||| || |||||  |||| || ||
gtaagtttttgctcaattcaggtgcactgctatggaaattcatagttaagtgcatgttcttttatcagtacggatggtggctaaactt-atatttctcttc--tgataatattaataatgtcttccgatgtttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAACAGGGATATCAACCATTGATGTCATGAACTCCATTGCTCGAGGCCAAAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 5
-------------------------------------------------gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttcctttt--ttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
                                                 |||  |  | | |      |||   ||||  | |      | |    |||  |  |    | |   ||     | ||  ||||    | | || |  ||||  | |||| ||||| || || || ||||||||||| ||||| || ||||||||||| || ||||| || || ||||||||||||||||| |||||  | ||||| ||
gtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaat---tgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcagGAAGTTCTATTAACCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTCATGAATTCCATTGCTCGTGGACAAAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 6
-------------------------------------------------gtgagttttttaggaggtggtattatttaaccattaaaactcacct-ctgaactttagagtttacaacagtggcagatcctgtactctttttctttcctttttt--cagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
                                                 |||  | || | |   || |||   ||||    |    | | |    | | | |  |    | |   ||     | |   |||| || | | || |  |||| |  |||| ||||| || ||||| ||||||||||| ||||| || ||||||||||| || ||||| || || |||||||| ||||| || |||||  | || || ||
gtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagagtagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcagGAAGTTCTATTAATCCCAGTGAGAGAACCTATCCAGAGGAGATGATCCAAACTGGGATATCCACCATTGATGTGATGAACTCCATTGCTCGTGGGCAAAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 7
gtgagttttttaggaggtggtattatttaaccattaaaactcacct-ctgaactttagagtt-tacaacagtg-gcagatcctgtactctt--tttctttcct-tttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
                                ||| ||| ||   | | |   | || | || ||      || |    |  | | | | |  | |||| ||  | ||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| || ||
------------------------------gtatttaaattcctttgcagtgttctacaattgtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 6
gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
                                || |||  ||  ||  | |  |  || | |  |    |  |    ||| |  |  | |     || |  |||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||| || ||
------------------------------gtataaaatttcttctggggaggtatgaatatgtatgtttatctttgccttttttaatatatcccccataattcagGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGACAGGGATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G42940.2 (Glycine max), 3'ss of exon 6
gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttcct--tttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
                       ||||||||        |     |||  | ||    ||| |     |||  |  |  |   | ||  |   ||||   | | ||||| ||||||||||||||||||||| |||| || ||||| |||||||| ||||| || || ||||||||||||||||||||||||||||| ||||| || ||
----------------------gtatttaacttcctttgcagtgttctacaattgtatgttgat----gtgtgaatttttaccccctaatatcttcccaatatgtcagGAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGACTGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 6
gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA-
                                ||  ||  ||  ||  | |  |  || | | ||    |  |    ||| |     | || |  |  |  |||||| ||||||||||| |||||||||||||| ||||| || |||||||| |||||||| || ||||| ||||||||||||||||||||||| ||||| || || 
-------------------------------tatataatttcttctggggaggtctgaatatgcatgtttttctttgcctttttaaatattttccctgtaattcaggAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACCATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 3'ss of exon 7
gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
                |||   |  |||| ||  |     |||| |    ||| |    |  | || |    |||||    || |  |   ||||  ||| | |||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || || || || |||||||||||||| ||||| ||||||||||||||
----------------gtgagctgctttagcctcttg---tcacataattactatctcata-ataaaacacacagat---ataattctagacttttgtttctccagGAAGTTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGTATATCCACCATTGATGTCATGAACTCTATCGCCAGAGGACAGAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 3'ss of exon 6
gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactcttt---ttctttccttt------tttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
|||  |    | |    |||||    |||        ||||  |  |  || ||| || | |       |   |  | || || || ||      | | |||        ||||||   ||| ||||| ||||||||| | ||||| ||||| |||||||| || || || || ||||| |||||||||||||| ||||||||  |||| || ||
gtgcttgcactcgctt-tggtacaccttataatcggtaactggctgcaaaattttggaatattttgtgctatgaattgctatattcgttaaacagtctacttgatgtggcttcagGTGCTTCAATCAACCCTAGTGAGCGGACATACCCTGAGGAGATGATTCAAACTGGAATATCTACCATTGATGTCATGAACTCTATTGCTCGAGGTCAAAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 3'ss of exon 5
gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
||| | | ||| |   ||  | |    |||||     | ||           || |   || |  | | | ||  ||    || ||  |||    | |    |||||   ||| |||||||| |||||  | || |||||||| |||||||| |||||||| || ||||| |||||||||||||| || || || |||||||| ||
gtgcggtcttttgcttgtcttttccactaacctcagcatcttggaatattttttaaagattgaagagatttgcttat----tagtcaatttga--catgacctcagGTGCTTCGATCAATCCAAGTGAACGGACGTATCCTGAGGAGATGATTCAGACAGGAATATCTACGATTGATGTCATGAACTCCATCGCTAGAGGACAAAA

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 6
gtgagttttttaggaggtggtattatttaaccattaaaactcacctct---gaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
||   |    |   |      |   | ||  |||||        ||||    | |||  ||   |     |||   | ||  |  |   | | |     ||  |  ||||    || ||||||||||||||| | || || || || |||||||| || ||||| || ||||| |||||||||||||| ||||||||  |||| || ||
gtacttccccttacactacccacattctactcattagccgcaggctcttggaaccttcggaaaattttgaagtaa-atatgtttaatattatattcgatctgatcacagGTGCATCGATCAATCCTAGTGAGCGGACGTACCCAGAGGAGATGATTCAAACAGGAATATCTACGATTGATGTCATGAACTCTATTGCTCGAGGGCAAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30327898|gb|CD011160.1|CD011160
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|110730165|gb|EE106929.1|EE106929
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|71862417|gb|DT011472.1|DT011472
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCT
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCT
EST: gi|30129885|gb|CB915224.1|CB915224
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|30325484|gb|CD008746.1|CD008746
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|32267904|gb|CD717063.1|CD717063
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|56409259|gb|CX017511.1|CX017511
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|156737783|gb|EV241904.1|EV241904
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|71864966|gb|DT014021.1|DT014021
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|30323990|gb|CD007252.1|CD007252
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|32248996|gb|CD714815.1|CD714815
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|71859980|gb|DT009035.1|DT009035
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|110357277|gb|EC920703.1|EC920703
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|32249022|gb|CD714841.1|CD714841
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|46917753|gb|CN547082.1|CN547082
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|71861589|gb|DT010644.1|DT010644
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|110424996|gb|EC991371.1|EC991371
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|56409525|gb|CX017777.1|CX017777
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
EST: gi|56409500|gb|CX017752.1|CX017752
EST:     CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTG                         GGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA
genomic: CATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttt ... cttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA
                         tcctgtactctttttc  CT-rich tract
                                   tttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcagGGAGTTCCATCAATCCTAGTGAGAGAACATATCCTGAAGAGATGATCCAGACAGGGATTTCTACAATTGATGTCATGAATTCTATTGCCAGAGGACAGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA