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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctctgaggcaatctactgaaactagtcggtttctccactcctttttgatgatactcatgtgtttccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAAGAGCTGCAAGTATGGATGAGGTGCTCCGAGAGGCTGATCTT

Basic information

species Vitis vinifera
transcript Vv03s0038g02510.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349815926|gb|FQ403543.1|FQ403543
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349816941|gb|FQ405067.1|FQ405067
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|110693266|gb|EE069349.1|EE069349
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|110419053|gb|EC985245.1|EC985245
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|110373782|gb|EC938130.1|EC938130
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349822402|gb|FQ412666.1|FQ412666
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTAGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|30326719|gb|CD009981.1|CD009981
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACC
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACC
EST: gi|110427704|gb|EC994154.1|EC994154
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|71867913|gb|DT016968.1|DT016968
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|110372385|gb|EC936546.1|EC936546
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349818788|gb|FQ409322.1|FQ409322
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGGGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGNAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|351017651|gb|FQ436004.1|FQ436004
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|110388512|gb|EC953270.1|EC953270
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|351015327|gb|FQ445611.1|FQ445611
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|26266758|gb|CA817821.1|CA817821
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349812344|gb|FQ406365.1|FQ406365
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAATTTGTTATAG                         CTTATGGTCAGTTCCTG
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTG
EST: gi|349811070|gb|FQ406058.1|FQ406058
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAAAAGTTTGTTACAG                         CTTATGGTCCGTTTCTGAAAGCCAGTGGTGAACAACCAGTGACC
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACC
EST: gi|110694076|gb|EE070866.1|EE070866
EST:     ATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: ATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|77582892|gb|DV220428.1|DV220428
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349811261|gb|FQ406249.1|FQ406249
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAATTTGTTACAG                         CTTATGGTCAATTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349808457|gb|FQ405601.1|FQ405601
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349819566|gb|FQ413450.1|FQ413450
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTT-CCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAA
EST: gi|349822836|gb|FQ398223.1|FQ398223
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAAAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|77581720|gb|DV219804.1|DV219804
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|110376509|gb|EC941574.1|EC941574
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349810282|gb|FQ401728.1|FQ401728
EST:     GATTTGCTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGATCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|22014743|gb|BQ799777.1|BQ799777
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|26267099|gb|CA818162.1|CA818162
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|29785291|gb|CB342154.2|CB342154
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349824738|gb|FQ414596.1|FQ414596
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAATTCCTGAAAGCCAGTGGTGAACAACCAGTGAC
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGAC
EST: gi|351028778|gb|FQ433208.1|FQ433208
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
EST: gi|349820992|gb|FQ404245.1|FQ404245
EST:     GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAG                         CTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA
genomic: GATTTACTATGATCTGTACCAAGCCACACGCCTGGAGAAGTTTGTTACAGgtctctgagg ... ccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactagtcggtttctccactcctttttgatgatactcatgtgtttccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAAGAGCTGCAAGTATGGATGAGGTGCTCCGAGAGGCTGATCTT
                       ttttgat  putative branch site (score: 4)
                                        tgtttcc  putative PPT
                      tttttgat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctctgaggcaatctactgaaactagtcggtttctccactcctttttgatgatactcatgtgtttccaaatgcagCTTATGGTCAGTTCCTGAAAGCCAGTGGTGAACAACCAGTGACCTGGAAAAGAGCTGCAAGTATGGATGAGGTGCTCCGAGAGGCTGATCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT