Sequence
atgc intronic sequence ATGC exonic sequence...gaaattgtcatcctctatttcgtatagatcttgcctaaaacatgctattttcttatattgttggtttcccatatgaattgctttgaagttgcatctatagGTGTTTCATGAAATGGTTAATGCTGAAGTGGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G35270.1 (Glycine max), 3'ss of exon 5
--gaaattgtcatcctctatttcgtatagatcttgcctaaaacatgctattttcttatattgttggtttcccatatgaattgctttgaagttgcatctatagGTGTTTCATGAAATGGTTAATGCTGAAGTGGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCAT
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gtacaatatctctcttcaactcaccatagcatgatattattaaatgtaatatttttgtaaattccgtatccattaaaaatg----ttaatctgtatgctcagGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAATGTTCATACCTATGGAGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTGGCTAAAGCAT
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G03760.1 (Glycine max), 3'ss of exon 6
--gaaattgtcatcctctatttcgtatagatcttgcctaaaacatgctattttcttatattgttggtttcccatatgaattgctttgaagttgcatctatagGTGTTTCATGAAATGGTTAATGCTGAAGTGGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCAT
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gtacaatatctctcttcaactcaccatagcatgatattattaaatgtcatatatttgtaaattccatatccattaaaaatg----ttaatctgtatgcttagGTGTTTCACAAGATGGTTAATTCTGGAGTGGAACCTAACGTTCATACCTATGGAGCACTTATTGGTGGTTGTGCTAGAGCTGGGCAAGTTGCTAAAGCAT
upper sequence: Vv03s0038g01320.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G34830.1 (Arabidopsis thaliana), 3'ss of exon 6
----gaaattgtcatcctctatttcgtatagatcttgcctaaaacatg-ctattttcttatattgttggtttc-ccatatgaattgctttgaagttgcatctatagGTGTTTCATGAAATGGTTAATGCTGAAGTGGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCAT
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cagaggaaatgttattat---tgtctaatcaagctt---caaaatatgactgcactcaaactccatagctctaactctctttctctctgtgtggttatattgtcagGTGTTCCACCAGATGTCAAATTCTGGAGTGGAAGCCAATCTTCACACATTTGGTGCACTTATTGATGGCTGTGCTAGAGCTGGACAAGTAGCTAAGGCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttcttatattgttggtttcccatatgaattgctttgaagttgcatctatagGTGTTTCATGAAATGGTTAATGCTGAAGTGGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCAT
ttatattgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaaattgtcatcctctatttcgtatagatcttgcctaaaacatgctattttcttatattgttggtttcccatatgaattgctttgaagttgcatctatagGTGTTTCATGAAATGGTTAATGCTGAAGTGGAACCAAATGTTCATACATATGGTGCACTTATTGATGGTTGTGGTAGAGCTGGACAAGTTGCTAAGGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - catcctc
- - - - - - - - - - - - - - -cttgcct
- - - - - - - - - - - - - - - - - - aaaacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttg