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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcaattcccccctgatctaacatagttcctatataatgcaatttctgatcatattaggaatcatgattcataaatttatggttttgtcattttgcttctgttttgaagGTTGAATCCGAACGCGCTTATCACCAAAGAGTCCTTCAAATACTTGAGCTACTTGAAACTGAG

Basic information

species Vitis vinifera
transcript Vv03s0038g00460.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00460.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G34660.2 (Arabidopsis thaliana), 3'ss of exon 6
gtaatgcaattcccccctgatctaacatagttc-ctatataatgcaatttctgatcatattaggaatcatgattcataaatttatggttttgtcattttgcttctgttttgaagGTTGAATCCGAACGCGCTTATCACCAAAGAGTCCTTCAAATACTTGAGCTACTTGAAACTGAG
                      ||      ||   || |  || || ||   | |||  || |   |  | |  ||||  |  |    | | |  |||   | ||| |    |||||||||| |||||||| || || ||||||||||| ||||||||||| |  || |||   |||
---------------------gtagtgcgattggttacaagatccatttctaggtcaactttgatttacttacccatatgta-acaactgtatt-tttcattcctgatc-acagGTTGAATCTGAACGCGCCTACCATCAAAGAGTCCTCCAAATACTTGATCAGCTCGAAGGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351024745|gb|FQ430570.1|FQ430570
EST:     CTGTTGAAGCTCAACAACAGAGGCTGACACTCCAGCGACTTATTGCCACA                         GTTGAATCCAAACGCGCTTATCCCCAAAGAGTC
genomic: CTGTTGAAGCTCAACAACAGAGGCTGACACTCCAGCGACTTATTGCCACAgtaatgcaat ... tgttttgaagGTTGAATCCGAACGCGCTTATCACCAAAGAGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaggaatcatgattcataaatttatggttttgtcattttgcttctgttttgaagGTTGAATCCGAACGCGCTTATCACCAAAGAGTCCTTCAAATACTTGAGCTACTTGAAACTGAG
                                    ttttgcttctgtttt  CT-rich tract
     aatcatgattcataaa  TA-rich tract