Sequence
atgc intronic sequence ATGC exonic sequencegtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G30490.1 (Glycine max), 3'ss of exon 6
---------------------------gtgagttgaccatccttt---ctttcattatatgattccacatttagttta-----cttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
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gtaggttcccatatccaatctttttatgcaactttat-atattttaagttctgattgtagaatttcatctttaaactattattcttgttggatggttcaactaaatg-tgaacg--ataat-ttttaacagGAAAATCCCGCCAGGGCTAATGGACATATTTTTAATGTGGGAAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAG
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA17G05440.1 (Glycine max), 3'ss of exon 4
----------------------gtgagttgaccatcctttctttcattatatgattccacatttagttta-----cttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
| || | || | | ||| || | | || ||| | || |||| | ||| ||| |||| || || |||| ||||| ||||||| |||||| ||||| || || || ||||| || |||||||||||||| | |||||||| ||||||||| ||||||||||| ||
gtaggttcccatatgaaactttatatattttaagtactga-tctgattgtagaagttcatcttttgactattattcttgtttcatggttcaactaaatg-tgaacg--ataat-ttttaacagGAAAATCCTGCCAGGGCCAATGGACATATTTTTAATGTTGGAAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACACAG
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA12G08930.1 (Glycine max), 3'ss of exon 6
--------------------------gtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaa------aacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
|| | ||| | ||| |||| | ||| || | ||| | | |||| | |||||| || || ||||| || |||| |||||| ||||| ||||| || |||||||| |||||||||||||| | ||| |||| ||||||||| ||||| |||| | ||
gtacgttctaatgtctatctttatttttgggactgtttgttttttaaataccatacaggtccatgtgatttttttttcaagtcaaattattgttggctggtccactgagtgttatgacctgttaacagGAAAACCCTGCCAGGGCCAATGGCCACATATTTAATGTGGGTAACCCAAACAATGAGGTTACTGTTAGGCAGCTTGCTGAAATAATGATTAAG
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G19550.1 (Glycine max), 3'ss of exon 6
-------------------------------------gtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
|| ||| || | | | |||| || || || | || | | | | |||| | |||||| || || ||||| || |||| |||||| ||||| ||||| || |||||||||||||| |||||||| | || |||| ||||||||| ||||| |||| | ||
gtacgttctaatgtcctatctttatttttgggactgtttgtgttttaaatacagattcatgtgatattttttcatgttcaattattgttgttgtcagctggtc----cactgagtgttatgacctgttaacagGAAAACCCTGCCAGGGCCAATGGCCACATATTTAATGTGGGCAACCCTAACAATGAGGTCACTGTTAGGCAGCTTGCTGAAATAATGATTCAG
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G08200.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagttgaccatcctttctttcattatatgattccacatttagttt-acttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
||||||| | || || ||| |||| | ||| ||| | | ||| || || | | || ||| ||||| ||||| | || || ||||| || ||||||||||| ||||||||||||||||||| ||||| | || ||||| |||||||||||||||
gtgagttt-cattcattgcttatccctggtgatatatcgtttgtttttatattattaaagaagttgcatctgaattgcttgcggaattctttaccagGAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAG
upper sequence: Vv03s0017g00680.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G27860.1 (Arabidopsis thaliana), 3'ss of exon 6
------------gtgagttgaccatcctttctttcattatatgattccacatttagttt-acttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
| | | | | ||| || | | || | |||| | | | || ||||| || |||| | | |||||| || || | ||||| ||||| ||||||||||| || |||||||| ||||| |||| |||||| | ||||| || ||||||||||| |||
gtacgttccattgcctgatatatagctttttgtttacaaactgttaatgttagaagttcgaagtagtttcaactaaaacctataatgacattgtatgtttgtggttcagGAAAACCCAGAGAGGGCAAATGGGCACATCTTCAACGTAGGCAACCCGAACAACGAAGTTACAGTAAGACAGCTCGCTGAAATGATGACCGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110696696|gb|EE073040.1|EE073040EST: GAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATT GATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAAC
genomic: GAACCTTTGTTTATATAAAGGATGCTATTGAAGCAGTCTTGTTGATGATTgtgagttgac ... cttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
tcttttctc CT-rich tract
ttggaaaaaaaaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttgaccatcctttctttcattatatgattccacatttagtttacttggaaaaaaaaaaaacaggatgctgaatattatgatcttttctcagGATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT