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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ctttttgtttgattcagTAGTTGGGCGGCTGCTTTTTCGGAATTAAACCCTTGGTTAAGGTCTATTCTTTGTTGTATATTTTATGTGAAAAGCTCTGACTCATTCTTTTTCCAATGC

Basic information

species Vitis vinifera
transcript Vv03s0017g00540.t01
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttgtttgattcagTAGTTGGGCGGCTGCTTTTTCGGAATTAAACCCTTGGTTAAGGTCTATTCTTTGTTGTATATTTTATGTGAAAAGCTCTGACTCATTCTTTTTCCAATGC
                                            gtttgat  putative branch site (score: 5)
                                       tttttgttt  CT-rich tract
                                       tttttgttt  TA-rich tract