Sequence
atgc intronic sequence ATGC exonic sequence...tgttgaaccaagtagagatcatcttttgagttccttcatataaactatagagttttgtgctcacataataatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCATTTACATGCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G04600.1 (Glycine max), 3'ss of exon 6
tgttgaaccaagtagagatcatcttttgagttccttcatataaactatagagttt--tgtgctcacataataatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCATTTACATGCAAT
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--atgaattatattaaaataaatcatagcatgtcttatgaatatttataattgttaatattttagagtcttcattgatgatgctgcattggttctaccctagGTCCTGTTGGTTGGTGTGACCACTGGAAACAGTGTGTTTGGTTTGTTCCTGGCAGTGGTATTTCCATATTCAAAGGGGAAGAAATTCATTTACATGCTAC
upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT4G16570.1 (Arabidopsis thaliana), 3'ss of exon 6
-----------------------------------------------------------------tgttgaaccaagtagagatcatct--tttgagttccttcatataaactatagagttttgtgctcacataataatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCATTTACATGCAAT
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gtgagttacaccttactgtgacttatgtcaattctcacgctgttatatggtttagaggaatccctttttcccccagttgcagtacattcagctccattgcgatcgaataggttgttgatcactgagtcatttgaccaattttggtt-ttcttttcttgt-taaacagGTGTTAGAGACTGGTGTGACCATTGGAAACAGTGTGTTTGGTTTACTCCAGGAACAGGCGTGTCCATATCCAAAGGAGAAAAAGTTCATTTGCATGCTTC
upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ12494 (Selaginella moellendorffii), 3'ss of exon 6
tgttgaaccaagtagagatcatcttttgagttccttcatataaactatagagttttgtgctcacataataatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCAT-TTACATGCAAT
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----------------------------------------------gtttgttttcctgttcgattctttgagtaactccgcagatt--tgtgttctcagGGGCAAGCGAGTGGTGTGACCATTGGAAACAATGTGTGTGGTTTCTTCCTGGACAAGGTGTTTCGGTGGAGGAGCAGTCGGAGCTTCGCGTCGTAGTCAG-
upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ06477 (Selaginella moellendorffii), 3'ss of exon 6
tgttgaaccaagtagagatcatcttttgagttccttcatataaactatagagttttgtgctcacataataatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCATTTACATGCAAT
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--------------------------------------------gtttgttttcctgtttgattcttttagtagctccttctaagAGGGTAA-TTCTCAGGAGCAAGTGATTGGTGTGACCATTGGAAACAATGTGTCTGGTTTCTTCCTGGACAAG-------------------------------------------
upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ08710 (Selaginella moellendorffii), 3'ss of exon 6
tgttgaaccaagtagagatcatcttttgagttccttcatataaactatagagttttgtgctcacataat--aatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCAT-TTACATGCAAT
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----------------------------------------------gtttgttttcctgtttgattctttgagtagctccttctaagagggtaa-ttctcagGCGCAAGTGATTGGTGTGACCATTGGAAACAATGTGTCTGGTTTCTTCCTGGACAAGGTATTTCGGTGGAGCAGCACTCAGAGCTTTGCGTCGTAGTCAG-
upper sequence: Vv02s0154g00540.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: EFJ10213 (Selaginella moellendorffii), 3'ss of exon 6
tgttgaaccaagtagagatcatcttttgagttccttcatataaactatagagttttgtgctcacataataatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCAT-TTACATGCAAT
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----------------------------------------------gtttgttttcctgtttgattctttgagtaactccgcagatt--tgtgttctcagGGGCAAGCGAGTGGTGTGACCATTGGAAACAATGTGTGTGGTTTCTTCCTGGACAAGGTGTTTCGGTGGAGGAGCAGTCGGAGCTTCGCGTCGTAGTCAG- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatagagttttgtgctcacataataatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCATTTACATGCAAT
tcttatt CT-rich tract
ataataatagaatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttgaaccaagtagagatcatcttttgagttccttcatataaactatagagttttgtgctcacataataatagaatttgttggtttgatgtcttattagGTGCTGGGGATTGGTGTGACCATTGGAAACAATGTGTTTGGTTCATTCCAGGGAAAGGTATATATGTGTCCAAACATGAAGAGGTGCATTTACATGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - gaaccaa
- - - - - - - - - - - - - - - - ccttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggt