1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaaaaattgatttggaaatctgtccttgatttgttcagcatgtaatgctggtattctgtgagagctgaaacttacttggtgtaatttatgtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGCATCCTACAGGGAAAGACAAGCTGCAATGGGGGTTATCCCTCATGCTATC
species | Vitis vinifera |
transcript | Vv02s0087g00880.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAG CATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGCEST: gi|30126923|gb|CB912262.1|CB912262
genomic: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAGgttttattct ... gtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGC
EST: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAG CATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGCEST: gi|30133139|gb|CB918478.1|CB918478
genomic: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAGgttttattct ... gtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGC
EST: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAG CATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGCEST: gi|45771714|gb|CN007566.1|CN007566
genomic: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAGgttttattct ... gtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGC
EST: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAG CATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGCEST: gi|110426734|gb|EC993152.1|EC993152
genomic: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAGgttttattct ... gtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGC
EST: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAG CATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGCEST: gi|30124776|gb|CB910115.1|CB910115
genomic: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAGgttttattct ... gtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGC
EST: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAG CATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGC
genomic: TCTGCCTTCCTGTCAAGAATTTTCCTTGGAAGCCCTATTTATTTGGGAAGgttttattct ... gtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGC
atgctggtattctgtgagagctgaaacttacttggtgtaatttatgtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGCATCCTACAGGGAAAGACAAGCTGCAATGGGGGTTATCCCTCATGCTATC
aacttac putative branch site (score: 2)
tgtaatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaaaattgatttggaaatctgtccttgatttgttcagcatgtaatgctggtattctgtgagagctgaaacttacttggtgtaatttatgtggaaacagCATTCTTGGGGGATCTTTAATTATTGCTGGTCTCTATTTGGTCACTTGGGCATCCTACAGGGAAAGACAAGCTGCAATGGGGGTTATCCCTCATGCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
-caaaaat
- - - - - - - ggaaatc
- - - - - - - - - - - gtccttg
- - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - tgctggt