Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtaataatactaataacaacatctttttcttgttttttgagttgtgggtgaaggagttctggtatgtttctaaaaatagaagcgcctagaaaatcaaaagctgacatgggtatttctttgtttttgggtttgcagGTGGTCTATGGTGGGCACACAGAATGGTATTCAGTATGGCCCTTTTGCTCTTCCCCAGAATGGTTTGCCCATCACAATCTCCCTCAAGTCATAGAAACAA

Basic information

species Vitis vinifera
transcript Vv02s0087g00710.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G35660.2 (Glycine max), 3'ss of exon 5
---------------------gta-tggtaataatactaataacaacatctttttcttgttttttgagttgtgggtgaaggagttctggtatgtttctaaaaatagaagcgcctagaaaatcaaaagctgacatgggtatttctttgtttttgggtttgcagGTGGTCTATGGTGGGCACACAGAATGGTATTCAGTATGGCCCTTTTGCTCTTCCCCAGAATGGTTTGCCCATCACAATCTCCCTCAAGT-CATAGAAACAA
                     |||     | |    || ||  ||||| |  ||| ||     | |  || ||  |  ||   || |   |  ||        |||||     |    ||   |  | ||       | ||| ||  |||||     |||||||||||| | |||||  || ||||||| ||||| ||||||||||||||||||||||| || || || ||||||||| | |  | ||||  ||   | | | 
gttggtaaaccttaatcatcagtaacaacagtgtctctcattgcaacaacccttttttagccataggctt-tgaatagagacattttc-caaattagggggtttagaatgttgtttctaacgtagtgttgcttcttttcttttttctttttttctggtgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATATGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAGCAAGTAGATA-

upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G35250.1 (Glycine max), 3'ss of exon 6
gtatggtaataatactaataacaac--atctttttcttgttttttgagttgtgggtgaaggagttctggtatgtttctaaaaatagaagcgcctagaaaatcaaaagctgacatgggtatttctttgtttttgggtttgcagGTGGTCTATGGTGGGCACACAGAATGGTATTCAGTATGGCCCTTTTGCTCTTCCCCAGAATGGTTTGCCCATCACAATCTCCCTCAAGT-CATAGAAACAA
    | |  |||   |||| || |   || |         ||||| ||   | ||    | | |   |  || ||  |  ||||    | |  |  ||| |    |||       | | | | ||| ||| |||   |||||||||||| | |||||  || ||||||| ||||| || |||||||||||||||||||| || || || ||||||||| | |  | ||||  ||   | | | 
----gttggtaaacttaatcacgagtaatttcaacaacccttttttagccataggctttgaa-tagagacatattattccaaattagggggtttctaaact----agcgtgtgctgct-tctatttttttctgg---tgcagGTGGTCTGTTGTGGGTGCAAAGAATGGGATTCAATACGGCCCTTTTGCTCTTCCCCAAAACGGCTTACCCATCACATTATTTCCCAAGAACAAGTAGATA-

upper sequence: Vv02s0087g00710.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G08340.1 (Glycine max), 3'ss of exon 6
----gtatggtaataatactaataacaacatctt--tttcttgttttttgagttgtgggtgaaggagttctggtatgtttctaaaaatagaagcgcctagaaaatcaaaagctgacatgggtatttctttgtttttgggtttgcagGTGGTCTATGGTGGGCACACAGAATGGTATTCAGTATGGCCCTTTTGCTCTTCCCCAGAATGGTTTGCCCATCACAATCTCCCTCAAGTCATAGAAACAA
    | |   |   | || ||  ||  |||   |  || |    | ||| |||     | ||         || ||  |||  |||||   |  |  | |||       |  ||  || | ||||  ||| |          ||||||||||| || ||||  || | ||||| ||||| ||||||||||||||  |||| |||||||| |||||||| ||| | |  | ||| | | |     | 
gttggcaaaatgg-attattaccaaagacactgtaattgcaacctctttcagtctcatggga---------ggcataattc--aaaattagaatgttttgaatgattctaattgtaattgctattattttat----------gcagGTGGTCTTTGATGGGTGCAAAAAATGGGATTCAATATGGCCCTTTTGCCATTCCACAGAATGGATTGCCCATAACACTATATCCCAAATAAAAAGTGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgcctagaaaatcaaaagctgacatgggtatttctttgtttttgggtttgcagGTGGTCTATGGTGGGCACACAGAATGGTATTCAGTATGGCCCTTTTGCTCTTCCCCAGAATGGTTTGCCCATCACAATCTCCCTCAAGTCATAGAAACAA
                  agctgac  putative branch site (score: 3)
                                tttctttgtttttg  putative PPT
                              tatttctttgttttt  TA-rich tract