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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttccatcttttgtttcctaacctacccagcatattgtccatgtctctaccttcaaaaacataggtaaactttgcagGGATACTGGGTGAGCGCCATAGCAGCAAGGCCTTCATCTACACATAAGGGTTACCTGTTGGGTGGGCTGGTGTGGTTCGCTGTGCCGTTCTCTTTGGCAA

Basic information

species Vitis vinifera
transcript Vv02s0033g01370.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01370.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G14790.1 (Glycine max), 3'ss of exon 7
--------------------------------------------------------------------gtaagtttccatcttttgtttcctaacctacccagcatattgtccatgtctctaccttcaaaaacataggtaaactttgcagGGATACTGGGTGAGCGCCATAGCAGCAAGGCCTTCATCTACACATAAGGGTTACCTGTTGGGTGGGCTGGTGTGGTTCGCTGTGCCGTTCTCTTTGGCAA
                                                                      |||||   |  || |  |   |    |     |  | ||||   |   | |  |||||||    | || ||    |  ||||||| |||||||| ||||| || ||||| ||||||||||| |||||||| ||| ||||||| ||  |||| ||||| |||||||| || |||||||| |
gtaagcattaattaagagatgtgtcttttcatcttcagtttgttttatttcgagtgtcctgaatatgcaaaagttataactttgtactcttttttgttatttgggttttgttactaattat-tcttcaaa----tggggaatgcct--agGGATATTGGGTGAGTGCCATTGCTGCAAGACCTTCATCTACTCATAAGGGGTACTTGTTGGGAGGCTTGGTCTGGTTTGCTGTGCCATTTTCTTTGGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacccagcatattgtccatgtctctaccttcaaaaacataggtaaactttgcagGGATACTGGGTGAGCGCCATAGCAGCAAGGCCTTCATCTACACATAAGGGTTACCTGTTGGGTGGGCTGGTGTGGTTCGCTGTGCCGTTCTCTTTGGCAA
                                aaaaacata  TA-rich tract