Sequence
atgc intronic sequence ATGC exonic sequence...tggttaagaaatttctcttacttgtgtgtttaagaatgtgagtttgttaagttacttgtatatctagatgtaagccttttgttgtgtttccatctgtcagGTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA04G14770.1 (Glycine max), 3'ss of exon 6
tggttaagaaatttctcttacttgtgtgtttaagaatgtgagtttgttaagttacttgtatatctagatg-taagcct---tttgttgtgtttccatctgtcagGTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTT
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----tggaacatttttcttttaattttgtctgatttgttgtatttaattagtaaaggaaatgtataactaataaacccaaattccttttttcctttcctgtcagGTTGATTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTT
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G34830.1 (Glycine max), 3'ss of exon 6
tggttaagaaatttctctta--cttgtgtgtttaagaatgtgagtttgttaagttacttgtatatctagatgtaagccttttgttgtgtttccat-ctgtcagGTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTT
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tgg--agcattttccttttaattttgtctgatttattgtatttaattagaaaaagaaatgtataacta-ataaacccaaattccttttttcctttactgtcagGTTGATTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTT
upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G31810.1 (Arabidopsis thaliana), 3'ss of exon 6
tggttaagaaatttctcttacttgtgtgtttaagaatgtga--gtttgttaagttacttgtatatctagatgtaagcc---ttttgttgtgtttccatctgtcagGTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTT
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----aatggatactctataactataataaatgattacgttcttgcctcttagtttgcttatctttc-agttctaacccccttttttttttctgtgtttgtattagGTTGACCTGCGAAGAGCAAATAACTGTGAAATAATGCTCACGAAAATAAAGATTCCTTTGCCAGATATGCTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttaagttacttgtatatctagatgtaagccttttgttgtgtttccatctgtcagGTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTT
tttccatct CT-rich tract
ttgtatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tggttaagaaatttctcttacttgtgtgtttaagaatgtgagtttgttaagttacttgtatatctagatgtaagccttttgttgtgtttccatctgtcagGTTGATTTGCGCAGAGCATATAATTGTGAGATAATGCTGACAAAAATAAAAATTCCTTTGCCAGACATGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -aagaaat
- - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - -gaatgtg