Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accaactaccatttataacaccttgatggaccatattttctgtttttcattgttcagttttattagtgaaatatcaattttgttgttttatcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGCAAAGAGACTATCACACAGCTGCAAGGAAAAAAAACAGGTCTTCGAGAAC

Basic information

species Vitis vinifera
transcript Vv02s0025g04840.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26258628|gb|CA809691.1|CA809691
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGG
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGG
EST: gi|110391337|gb|EC956303.1|EC956303
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
EST: gi|22011545|gb|BQ796579.1|BQ796579
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
EST: gi|34546915|gb|CF515147.1|CF515147
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
EST: gi|110422883|gb|EC989216.1|EC989216
EST:     TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCG                         GGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC
genomic: TCACGGCCTTCTTGGACCCATCAACTGGATGCAGACTTTTTCCTTCACCGgtttgtatat ... tcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattgttcagttttattagtgaaatatcaattttgttgttttatcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGCAAAGAGACTATCACACAGCTGCAAGGAAAAAAAACAGGTCTTCGAGAAC
                                        ttttatc  CT-rich tract
            ttttattagtgaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
accaactaccatttataacaccttgatggaccatattttctgtttttcattgttcagttttattagtgaaatatcaattttgttgttttatcatggttagGGTGGGTGCGATGAGGAAATTAGCCTGTTTCTATACAAAGGAAGTGTAAGCAAAGAGACTATCACACAGCTGCAAGGAAAAAAAACAGGTCTTCGAGAAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
-ccaacta
- - - - - - - ataacac
- - - - - - - - - - -cttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaata