1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtagaatttgcaccactgtattagtatgcctttaacttcaaattttatcttcttttttggaatttttggttcttctttatggtggtggtttggaggaataaattgctgttgtcccaaagcaactggcatgtagcctactttgtggatctaaacctgttcaattctttttgtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAG
species | Vitis vinifera |
transcript | Vv02s0025g04710.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATT GTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAEST: gi|110372909|gb|EC937106.1|EC937106
genomic: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATTgtaagtagaa ... gtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGA
EST: TGCTGTTGTTGCACTGTCATT GTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAEST: gi|110361871|gb|EC925373.1|EC925373
genomic: TGCTGTTGTTGCACTGTCATTgtaagtagaa ... gtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGA
EST: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATT GTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAEST: gi|34549756|gb|CF517988.1|CF517988
genomic: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATTgtaagtagaa ... gtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGA
EST: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATT GTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAEST: gi|110373561|gb|EC937809.1|EC937809
genomic: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATTgtaagtagaa ... gtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGA
EST: CTCAAGATGTTCTTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATT GTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAEST: gi|351040093|gb|FQ425179.1|FQ425179
genomic: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATTgtaagtagaa ... gtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGA
EST: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATT GTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAEST: gi|110375639|gb|EC940647.1|EC940647
genomic: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATTgtaagtagaa ... gtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGA
EST: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATT GTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGA
genomic: CTCAAGATGTTCCTCTTGAATGTCCCAGCTGCTGTTGTTGCACTGTCATTgtaagtagaa ... gtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGA
ggcatgtagcctactttgtggatctaaacctgttcaattctttttgtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAG
atctaaa putative branch site (score: 3)
ttctttttgt putative PPT
aattctttttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagaatttgcaccactgtattagtatgcctttaacttcaaattttatcttcttttttggaatttttggttcttctttatggtggtggtttggaggaataaattgctgttgtcccaaagcaactggcatgtagcctactttgtggatctaaacctgttcaattctttttgtattgacagGTTTTTCTTCCTGGATGATGTGACTGGATTTGAAATCACTTTTCTTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG