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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctctctttctaatccttgatttttctttttggctttcctagtgtttttgtttatttctttttcttgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAG

Basic information

species Vitis vinifera
transcript Vv02s0025g03510.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352763506|gb|FQ473209.1|FQ473209
EST:     GAGTTGAAGCGAATGCAG                         ATGACCGATGCTCGCTGCAAAAGATGCCAGGNNNNNNNNGTGGGTGTAACA
genomic: GAGTTGAAGCGAATGCAGgtttctctct ... tgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACA
EST: gi|110708855|gb|EE086872.1|EE086872
EST:     CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAG                         ATGACCGATGCTCGCTGCAAAAGATGCCAGGNNNNNNNNGTGGGTGTAACA
genomic: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGgtttctctct ... tgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACA
EST: gi|34550295|gb|CF518513.1|CF518513
EST:     CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAG                         ATGACCGATGCTCGCTGCAAAAGATGCCAGGNNNNNNNNGTGGGTGTAACA
genomic: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGgtttctctct ... tgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACA
EST: gi|37184086|gb|CF603440.1|CF603440
EST:     CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAG                         ATGACCGATGCTCGCTGCAAAAGATGCCAGGNNNNNNNNGTGGGTGTAACA
genomic: CGGCAGAAGAAACAGCAAAGAAGGAGCCTGAGGAGTTGAAGCGAATGCAGgtttctctct ... tgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctttttggctttcctagtgtttttgtttatttctttttcttgggtttcagATGACCGATGCTCGCTGCAAAAGATGCCAGGAAAAAAAAGTGGGTGTAACAGACATCATCCATGCAGGAAATGCAGACCGCTACCAG
                      tgtttttgtttatttc  CT-rich tract
                        tttttgtttatttctt  TA-rich tract