1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcagccaaaacaatcccatgttcttcctctcttcttgaacaggctccaagaactattaatcgtcttaaattaatatttttcagGTGGGCTTTTCTACAAAGGGAGCGAGAGCAATCTGCAATATGTGACTTCCACAGCATTCCTCCTCTTAACATACGCCAAGTATCTAAGCTCAAATGGAGG
species | Vitis vinifera |
transcript | Vv02s0025g02650.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGCTCTCTGATTCCAGGAACATCCAGCTTTCAGGCCCAATACACTCCAG GTGGGCTTTTCTACAAAGGGAGCGAGAGCAATCTGCAATATGTGACTTCCAEST: gi|110733016|gb|EE108808.1|EE108808
genomic: ATGCTCTCTGATTCCAGGAACATCCAGCTTTCAGGCCCAATACACTCCAGgtcagccaaa ... tatttttcagGTGGGCTTTTCTACAAAGGGAGCGAGAGCAATCTGCAATATGTGACTTCCA
EST: ATGCTCTCTGATTCCAGGAACATCCAGCTTTCAGGCCCAATACACTCCAG GTGGGCTTTTCTACAAAGGGAGCGAGAGCAATCTGCAATATGTGACTTCCA
genomic: ATGCTCTCTGATTCCAGGAACATCCAGCTTTCAGGCCCAATACACTCCAGgtcagccaaa ... tatttttcagGTGGGCTTTTCTACAAAGGGAGCGAGAGCAATCTGCAATATGTGACTTCCA
ctcttcttgaacaggctccaagaactattaatcgtcttaaattaatatttttcagGTGGGCTTTTCTACAAAGGGAGCGAGAGCAATCTGCAATATGTGACTTCCACAGCATTCCTCCTCTTAACATACGCCAAGTATCTAAGCTCAAATGGAGG
tatttttc CT-rich tract
aactattaatcgtctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagccaaaacaatcccatgttcttcctctcttcttgaacaggctccaagaactattaatcgtcttaaattaatatttttcagGTGGGCTTTTCTACAAAGGGAGCGAGAGCAATCTGCAATATGTGACTTCCACAGCATTCCTCCTCTTAACATACGCCAAGTATCTAAGCTCAAATGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG