1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtaaagaaaagtttggctagtgactgggttacttatttctttgggtttcaaagcacaacttaactgtttctcttagaattatgttctccatgccttgcagGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAG
species | Vitis vinifera |
transcript | Vv02s0025g02550.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAG GCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCEST: gi|28961249|gb|CB340635.1|CB340635
genomic: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAGgtaatatttc ... tgccttgcagGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATC
EST: GCANNNCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAG GGCTGCAA-TGATCCCATTGCTCCATEST: gi|71866513|gb|DT015568.1|DT015568
genomic: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAGgtaatatttc ... tgccttgcagG-CTGCAAATGATCCAATTGCTCCAT
EST: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAG GCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCEST: gi|110388876|gb|EC953674.1|EC953674
genomic: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAGgtaatatttc ... tgccttgcagGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATC
EST: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAG GCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCEST: gi|110373722|gb|EC938021.1|EC938021
genomic: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAGgtaatatttc ... tgccttgcagGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATC
EST: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAG GCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCEST: gi|28961880|gb|CB340949.1|CB340949
genomic: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAGgtaatatttc ... tgccttgcagGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATC
EST: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAG GCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATC
genomic: GCAGTTCAGATTCCATAAAACATGTGTGCACACCTTTGCTTTGCATCCAGgtaatatttc ... tgccttgcagGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATC
tttcaaagcacaacttaactgtttctcttagaattatgttctccatgccttgcagGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAG
acttaac putative branch site (score: 3)
ttctccat putative PPT
ttagaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaaaagtttggctagtgactgggttacttatttctttgggtttcaaagcacaacttaactgtttctcttagaattatgttctccatgccttgcagGCTGCAAATGATCCAATTGCTCCATCCAGGGGAATTCCTCGTGAAGACATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- -aagaaaa
- - - - - - -tggctag
- - - - - - - - - - tgactgg
- - - - - - - - - - - - - - - - - - - - - - - - caaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctcca