1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctcgagcaaatggaagtaaaacttgtcgacattgattttcatttgatacctaactgctaaaacttgtaaacattgattttcatttgatatctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGATGGTTGCAGCATTTGAGAAGGCATCTGGAAAG
species | Vitis vinifera |
transcript | Vv02s0025g01580.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAG GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGAEST: gi|110720449|gb|EE096391.1|EE096391
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAN GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGAEST: gi|110358293|gb|EC922402.1|EC922402
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAG GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGAEST: gi|110719820|gb|EE095280.1|EE095280
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAG GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCNGTTTTGGAGAEST: gi|110718272|gb|EE094913.1|EE094913
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAG GCTGTGAAGTGTACAACTTGNGAACAGGAAAAGGAACATCGGTTTTGGAGAEST: gi|110720256|gb|EE096017.1|EE096017
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCANAAATAG GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCCGTTTTTGGAGEST: gi|110720916|gb|EE097257.1|EE097257
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTT-GGAG
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAG GCTGTGAAGTGTANCA-CTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGEST: gi|30329922|gb|CD013184.1|CD013184
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTA-CAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAG
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAG GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGAEST: gi|110718494|gb|EE095391.1|EE095391
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAN GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGAEST: gi|110720332|gb|EE096162.1|EE096162
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAG GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGAEST: gi|110385299|gb|EC949809.1|EC949809
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAATTCAGAAATAG GCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGAEST: gi|110718330|gb|EE095043.1|EE095043
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCANGCTATTCAACTCAGAAATAG GCTGTGAAGTGTACAACTTGGGAACANGAAGAGGAACATCCGTTTTGAAGAEST: gi|110719030|gb|EE096543.1|EE096543
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGA
EST: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAG GCTGTGAAGTGTACAACTTGGGAACAGGNAAAGGAAACATCGGTTT-GGAG
genomic: GGCAGATGGGCACATTGCAGCTTTGTGCAAGCTATTCAACTCAGAAATAGgtcagtattc ... ctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAA-CATCGGTTTTGGAG
atacctaactgctaaaacttgtaaacattgattttcatttgatatctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGATGGTTGCAGCATTTGAGAAGGCATCTGGAAAG
atctaac putative branch site (score: 2)
attttcatttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgagcaaatggaagtaaaacttgtcgacattgattttcatttgatacctaactgctaaaacttgtaaacattgattttcatttgatatctaactgcagGCTGTGAAGTGTACAACTTGGGAACAGGAAAAGGAACATCGGTTTTGGAGATGGTTGCAGCATTTGAGAAGGCATCTGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - -gcaaatg
- - - - - - - -gtaaaac
- - - - - - - - - - - - - - - - - - - - - - - -acctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaaca