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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcatattttataagttcttatggatgactaaggattcatggcaatatttctgaagtatcaaaaaaattattagttgaaattactgtaccactaataataagttcacttggtggcaatttgagaaataataatattaaatgctgagaatctgatttcttcttcattgtttatctttgcctctttcagGTGTTGAAAACATTTCCTAACACAACTGAATACTTGAAAA

Basic information

species Vitis vinifera
transcript Vv02s0025g01410.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781555|gb|FQ468399.1|FQ468399
EST:     GCCATTCAGAGCTGTCAATTGTTTTCGTAGAAGNNNNNNNGATTCCTGAG                         GTGTTGAAAACATTTCCTAACAGAACTGGATACTTGAAAACA
genomic: GCCATTCAGAGCTGTCAATTGTTTTCGTAGAAGAAAAAAAGATTCCTGAGgtacgcatat ... cctctttcagGTGTTGAAAACATTTCCTAACACAACTGAATACTTGAAAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattaaatgctgagaatctgatttcttcttcattgtttatctttgcctctttcagGTGTTGAAAACATTTCCTAACACAACTGAATACTTGAAAA
               atctgat  putative branch site (score: 4)
                     tttcttcttcattgtt  CT-rich tract
                               attgtttat  TA-rich tract