Sequence
atgc intronic sequence ATGC exonic sequencegtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtagGATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAGTACTACTTGAGCTACCTTGGAAACAATGGCCAGTCGCTCGGAGGAACCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G02610.1 (Glycine max), 3'ss of exon 4
-------------------------------------------------------gtacgtgatcatagctcttttgaactagtgattccatgtg-ggacag--tgcacggtttg--gtctggtgcaccactt------------taactgaattaactgt--atgacatgttggtaattgatgtttgtagGATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAGTACTACTTGAGCTACCTTGGAAACAATGGCCAGTCGCTCGGAGGAACCG
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gtaagtttttgttgtttaattatgtttatttcacccctttctgttaaaattgagcaaatacaaaactttcccatttggaaaaatgaattaatgtgcatacggcatgcctaaattaaaattaaaaaaatcaattgcaaatgaaaggaaacaaaagtaacaattaattgagggttggtaattga-acgtgcagGATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAACCAGTATTACTTGGATTACCTTGGAAGAAATGGTGATTCCATGGGTGGAACTG
upper sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G36930.1 (Glycine max), 3'ss of exon 4
gtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggt----ttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtagGATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAGTACTACTTGAGCTACCTTGGAAACAATGGCCAGTCGCTCGGAGGAACCG
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----gtaatttt--ttgttttataattgtgtttattgattcacccctttatgttaaagttgaacaaatacaaaactttccc---attaattgagtg-----ttggtaattgaacgtt-cagGATGAATTGCTCTGGGCTGCTGCTTGGCTCTACCAAGCATCTAACAATCAGTATTACTTGGATTACCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717038|gb|FC065898.1|FC065898EST: GCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCT GATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAG
genomic: GCAGCATCACAGTGGCCCAGAAGTACTACCGGTCTTACAGTGGATACGCTgtacgtgatc ... atgtttgtagGATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtagGATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAGTACTACTTGAGCTACCTTGGAAACAATGGCCAGTCGCTCGGAGGAACCG
tttaactgaattaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgtgatcatagctcttttgaactagtgattccatgtgggacagtgcacggtttggtctggtgcaccactttaactgaattaactgtatgacatgttggtaattgatgtttgtagGATGAGTTGCTCTGGGCAGCTGCTTGGTTATATCAAGCAACTAACAATCAGTACTACTTGAGCTACCTTGGAAACAATGGCCAGTCGCTCGGAGGAACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA