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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgcctttttctttttgaatttagcccccacaagcccccgggcccaccatgaatatatctatgttttgtcatttgggttgcagGAGCTGGAAGAGGTGGGAGGCATGGAAGAGTTGGAAAAGGAGATCAATAGAAGAATTAAATCATCTGACTCTTCATGAATCATGAATCATGACAGCCATT

Basic information

species Vitis vinifera
transcript Vv02s0025g00240.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26258277|gb|CA809340.1|CA809340
EST:     ACTCTGACAAATTTAATGGAGTTCCATACGGGCTGTTCTTGGGACCCATG                         GAGCTGGAAGAGGTGGGAGGCATGGAAGAGTTGGAAAAGGAGATCAATAGA
genomic: ACTCTGACAAATTTAATGGAGTTCCATACGGGCTGTTCTTGGGACCCATGgtcagtgcct ... tgggttgcagGAGCTGGAAGAGGTGGGAGGCATGGAAGAGTTGGAAAAGGAGATCAATAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacaagcccccgggcccaccatgaatatatctatgttttgtcatttgggttgcagGAGCTGGAAGAGGTGGGAGGCATGGAAGAGTTGGAAAAGGAGATCAATAGAAGAATTAAATCATCTGACTCTTCATGAATCATGAATCATGACAGCCATT
                       aatatatctatgtttt  TA-rich tract