Sequence
atgc intronic sequence ATGC exonic sequencegtgagttaattaagctactgtatcatttggtctgctgctgagtagacatattctttttcatatggatctgtagaataacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G01740.1 (Glycine max), 3'ss of exon 5
-----------------------------gtgagttaattaagctactgtatcatttggtctgctgctgagtaga-catattctttttcatatggatctgtagaataacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
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gtgagttttccccttttgtttttttgtgctcattctcaccttgtctttgtctgtcttttccctcttctgtgcaaaacttgttcttatccgagtaag---gaaaaataatctattagttttcatgcagGGAAACACTCCTGGCAGCATGGAAGCTGATGGTAAACCTCCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATA
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G34170.1 (Glycine max), 3'ss of exon 6
---------------------gtgagttaatt--aagctactgtatcatttggt------ctgctgctgagtaga-catattctttttcatatggatctgtagaataacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
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gtgagtttttcttttgtttttttgtgctcattctcaccttctctttgtctctgtattttccctcttctgtgcagaacttgttcttatccaagtaag---gaaaaataacctattagttttcatgcagGGAAACACTCCTGGCAGCATGGAAGCTGATGGCAAGCCTTCTGAGGTGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATA
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G34280.1 (Glycine max), 3'ss of exon 6
-----------------------------------------------gtgagttaattaagctactgtatcatttggtctgctgctgagtagacatattctttttcatatggatct--gtagaa-taacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
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gtttgttctttagccttctgctttttttttcccctgctctgctctctgtctcttgcttgctcttttttaca--tcaccctgtattttctccttcctgttctgtattgtctttatccaagtaaaagtaacctacaattttacatgcagGGAAATGCCCCAGGCCGCATCGAAGTTGGTGGTAAACCTCCTGAAGTGAAGGAAAAATTACCTATCAAAAGATCAAAAGGAAGTGCTAGTGGTGGTAATT
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G34280.2 (Glycine max), 3'ss of exon 4
--gtgagttaattaagctactgtatcatttggtctgctgctgagtagacatattctttttcatatggatct--gtagaa-taacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
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ctgtctcttgcttgctcttttttaca--tcaccctgtattttctccttcctgttctgtattgtctttatccaagtaaaagtaacctacaattttacatgcagGGAAATGCCCCAGGCCGCATCGAAGTTGGTGGTAAACCTCCTGAAGTGAAGGAAAAATTACCTATCAAAAGATCAAAAGGAAGTGCTAGTGGTGGTAATT
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G15810.1 (Glycine max), 3'ss of exon 6
---------------------------------------------gtgagttaattaagctactgtatcatttggtctgctgctgagtagacatattctttttcatatggatct--gtagaa-taacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
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gtgagttctttagccttctgctttttcccccatgctctgcgctctgtcacttggttgctcttttttttttgtcaccctgtattttctccttcctgttttgtagtgtctttaaccaagtaaaagtaacctacgatttgacgtgcagGGAAATGCCCCAGGTAGCATCGAAGTTGGTGGTAAACCTCCTGAAATGAAGGAAAAATTACCTATCAAAAGATCAAAAGGAAGTGTTAGTGGTGGTAATT
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G32150.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagttaattaagctactgtatcatttggtctgctgctgagtagacatattctttttcatatggatctgtagaataacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
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gtgagttttctctgttatcactgtttttattagagtatgggtcagatgggatcttgct----------tgaagaatgttttgga--------ttcagGGTAATACTGGAAGTGTTATTGAGGGTGATGGTAAACCATCTGATGGGAAGGAAAAATTGCCAATCAAAAGATCAAAAGGAAGCTTGGGAAGTTTGAATA
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT2G35530.1 (Arabidopsis thaliana), 3'ss of exon 6
gtgagttaattaagctactgta--tcatttggtctgctgctgagtagacatattctttttcatatggatctgtagaataacttgtaaat--tttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
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gtgagttagc-gtcccatcatacttcattcgttct-ttctcaaacggtctttgctacctttgcttattgtaggaacataattgagagatgattttatgcagGGCAATACTACAGGCGGCACTGATGGTGATGCTAAACAATCTGAAGTGAAGGAAAAATTGCCCATCAAAAGATCAAGAGGAAGCTTGGGAAGTTTGAACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699224|gb|EE076034.1|EE076034EST: CTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGACCTCT GGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAG
genomic: CTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCTGAGACCTCTgtgagttaat ... tttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagacatattctttttcatatggatctgtagaataacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
gaataac putative branch site (score: 2)
ttttcat putative PPT
aataacttgtaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttaattaagctactgtatcatttggtctgctgctgagtagacatattctttttcatatggatctgtagaataacttgtaaattttcatgtagGGAACCACTCCGGGAAGCATGGAAGCTGATGGTAAATCATCTGAGGGTAAGGAAAAATTGCCCATCAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA