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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgattatatcaaacctcttttaaacaatgtacctaatcatttcatttcctacactttgatttacaagtttctttttccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG

Basic information

species Vitis vinifera
transcript Vv02s0012g01220.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0012g01220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G40650.4 (Glycine max), 3'ss of exon 6
--------gttgattatatca--aacctcttttaaacaatgtacctaatc--att--tcatttcctacactttgatttacaagtttctttttccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG
        ||| |||    |    |  | ||    ||  ||| |  | ||  |||    ||  |||   ||     ||     ||| | | ||    ||||||||||||||||| |||||||| ||||| ||||||||||| |||||    ||| | |||||||| |||| ||
gtgactttgttaatttccccttttatattttccctactttgttctcagtctgattaacgatggcctctcctaatggttctgtctttttctctctctttcagATCCTACTTATGTTGTTGCACCTGTTTTACAATCTCGCTCTGGTCGCCAAGATTTGAAAAAGCTATTTGAAG

upper sequence: Vv02s0012g01220.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G04660.2 (Glycine max), 3'ss of exon 6
--------------------gttgattatatcaaacctcttttaaacaatgtacctaatcatttcatttccta-cactttgatttacaagtttctttttccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG
                     |||  | |  |  || || ||   |   || |   ||| ||  ||| ||| |    ||  || |     ||| ||| ||    ||||||||||||||||| |||||||| ||||| ||||||||||| |||||    ||| | |||||||| |||| ||
gtgactttgtttattgcccttttgtattttccctacttcgttctcagtctg-attaaatgatggcatctcccaatggttctatcttt---tttttttctctctttcagATCCTACTTATGTTGTTGCACCTGTTTTACAATCTCGCTCTGGTCGCCAAGATTTGAAAAAGCTATTTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352769120|gb|FQ471068.1|FQ471068
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|351012152|gb|FQ426874.1|FQ426874
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAA-G                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGCCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|352776642|gb|FQ465440.1|FQ465440
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|349828788|gb|FQ419121.1|FQ419121
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGCCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|352781173|gb|FQ466486.1|FQ466486
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|156737157|gb|EV241278.1|EV241278
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|110363320|gb|EC926898.1|EC926898
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|351012567|gb|FQ430131.1|FQ430131
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCATTTTTGCAATCTCGCTCCGGCCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|349828983|gb|FQ419515.1|FQ419515
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|351024867|gb|FQ430692.1|FQ430692
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTT
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTT
EST: gi|110380859|gb|EC946157.1|EC946157
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
EST: gi|352769544|gb|FQ468472.1|FQ468472
EST:     CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAG                         ATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG
genomic: CACAGCTGCTCTTACTGGTTCCCTCTATTATGTGGCTGCCTCTCCAAAAGgttgattata ... tccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctaatcatttcatttcctacactttgatttacaagtttctttttccacatcagATCCTACTTATGTGGTTGCACCAGTTTTGCAATCTCGCTCCGGTCGTGCGGATCTAAAAAAGCTCTTTGCAG
                                     tttctttttccacatc  CT-rich tract
        atttcattt  TA-rich tract