1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tgaaattattcctcaagagtaattttagcacatctactcttatgtaggacttttatctgcaagtgtatttattgctagttggaacttcattttgttgcagTAGCAAGCCAACTGGGGGGGCAGGTGGACCGTTTGGACAGGAGAACACATTCAAATCAGGTCATATTAACCATAAAAGCATGACAGTACCATCAGACTGG
species | Vitis vinifera |
transcript | Vv02s0012g00870.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAGATGATGGTCTTGTTGTGGATGGCAGGAAGCTTTTCTTTGAGTACAG TAGCAAGCCAACTNNNNNNNCAGGTGGACCGTTTGGACAGGAGAACACATTEST: gi|352772792|gb|FQ473830.1|FQ473830
genomic: GGAGATGATGGTCTTGTTGTGGATGGCAGGAAGCTTTTCTTTGAGTACAGgtatattcct ... tttgttgcagTAGCAAGCCAACTGGGGGGGCAGGTGGACCGTTTGGACAGGAGAACACATT
EST: GGAGATGATGGTCTTGTTGTGGATGGCAGGAAGCTTTTCTTTGAGTACAG TAGCAAGCCAACTNNNNNNNCAGGTGGACCGTTTGGACAGGAGAACACATT
genomic: GGAGATGATGGTCTTGTTGTGGATGGCAGGAAGCTTTTCTTTGAGTACAGgtatattcct ... tttgttgcagTAGCAAGCCAACTGGGGGGGCAGGTGGACCGTTTGGACAGGAGAACACATT
aggacttttatctgcaagtgtatttattgctagttggaacttcattttgttgcagTAGCAAGCCAACTGGGGGGGCAGGTGGACCGTTTGGACAGGAGAACACATTCAAATCAGGTCATATTAACCATAAAAGCATGACAGTACCATCAGACTGG
cttcatttt CT-rich tract
tgtatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaattattcctcaagagtaattttagcacatctactcttatgtaggacttttatctgcaagtgtatttattgctagttggaacttcattttgttgcagTAGCAAGCCAACTGGGGGGGCAGGTGGACCGTTTGGACAGGAGAACACATTCAAATCAGGTCATATTAACCATAAAAGCATGACAGTACCATCAGACTGG
-gaaatta
- - - - -tcctcaa
- - - - - - - - - - - - - - - catctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctag