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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcagggagttgcagaattgccagtgaaaattctaaaatttcaagttttatttcgactagtttttcatgaaatcatgatcttgcttgcagGCTGTAGGGCTTCCAAGTCAGGTTGCGAGGTTTTCAAAG

Basic information

species Vitis vinifera
transcript Vv01s0244g00110.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110381547|gb|EC934750.1|EC934750
EST:     CTGCTAGAGTGCTTGTGAACAGTGATGAAGCTTGTGTTCATGGACGGAAG                         GCTGTAGGGCTTCCAAGTCAGGTTGCGAGGTTTTCAAAG
genomic: CTGCTAGAGTGCTTGTGAACAGTGATGAAGCTTGTGTTCATGGACGGAAGgcagggagtt ... ttgcttgcagGCTGTAGGGCTTCCAAGTCAGGTTGCGAGGTTTTCAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatttcaagttttatttcgactagtttttcatgaaatcatgatcttgcttgcagGCTGTAGGGCTTCCAAGTCAGGTTGCGAGGTTTTCAAAG
 ttctaaa  putative branch site (score: 2)
                                           tcttgctt  putative PPT
       aagttttattt  TA-rich tract