Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccttcttatattgcaacctcagttggatttggcagtaattgttgtcagcatcctaagaaagttatctaccatttacttaaacagttccataaataaggtccataatttactgccaacttcctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTTGTTTCAAGGACAATTGATTCCAATGTATCTGAAGCTGAAGGCATTTACA

Basic information

species Vitis vinifera
transcript Vv01s0150g00190.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g70170.1 (Oryza sativa), 3'ss of exon 5
gtgagccttcttatattgcaacctcagttggatttggcagt--aattgttgtcagcatcctaagaaagttatctaccatttacttaaacagttccataaataaggtccataatttactgccaact-tcctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTTGTTTCAAGGACAATTGATTCCAATGTATCTGAAGCTGAAGGCATTTACA
|||||  | |  |    ||||  | | ||    ||  ||     |||||||  |  | |  || | || |      ||||   | | |||    |||    |   |    ||   | ||| |||| | |  ||||||||||| |||||||||||||||||||| |  |||||  | ||||| ||    ||||| |||||||| ||  | || || || || ||||||||  | ||||
gtgagtttccaca----gcaaatttacttcatcttatcatctagattgttgg-aatagctgaatagagct---cgacattccatcataca----catgggcataatttcgaagcaaatgctaactgtgcgctttcagGTTTCTACCATGCCCGACCAAGCTCTGCTGGCATTCATCGACCACGGCACAGTTTCGAGGACAATCGACGCAAACGTTTCGGATGCTGAAGGTGTATACA

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G47790.3 (Glycine max), 3'ss of exon 5
----------------gtgagccttctta---tattgcaacctcagttggatttggcagtaattgttgtcagcat----cctaagaaagttatctaccattta-cttaaacagttccataaa----taaggtccataatttactgc-----------------caacttcct-----ttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTTGTTTCAAGGACAATTGATTCCAATGTATCTGAAGCTGAAGGCATTTACA
                 |   | ||   |   | ||  ||      | |  ||   |   ||    | | || ||      |||   | || | |    | |  | |     ||   | | |    |||   ||||| ||| ||                   |||   | |     ||| ||||| ||||||||||| |||||||| || ||||||||| |||| ||||||   || || |||||||| || || |||| ||||||||||||||| || ||||
gtaagccatcattttttttcactttgccaattttttataattatgttcgagttgatctaaaacaaatattaggattagctttaaaggacttgtttgttgtctggccttgtttgtgttaaagaaacttaaaaaccatagtttcctttgctgtatctcatcatagcaataccttgttactttccagGTATCAACCATGCCAGACCAAGCCCTTCAAGCATTTATTGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATACA

upper sequence: Vv01s0150g00190.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G53700.1 (Glycine max), 3'ss of exon 6
-------------------------gtgagccttcttatattgcaacctcagttggatttggcagtaattgttgtcagcatcctaagaaagttatctaccattta-cttaaacagttccataaa---taaggtccataattt-----actgc--------------caacttcct--ttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTTGTTTCAAGGACAATTGATTCCAATGTATCTGAAGCTGAAGGCATTTACA
                          | |   |  ||||| |  |   || | | ||| |   ||  | | || | ||| |  |||   |  | | |    | |  | |     |||| | |||   |||   ||| | |||      ||||               | |||| |  ||| ||||| ||||| ||||| |||||||| || ||||||||| | || ||||||   || || |||||||| || || |||| ||||||||||||||| || ||| 
tgtaagccatcatttttttcactttctcaatttgtttataat-tatgatcgggttgatcttaaagctaatattattagctt--taatggacctgtttgttgtctggccttgtttgttctaaaaaacttaaaaaccaaagtttcctttgctgcatctcacatagcaataccttcttactttacaGGTATCAACAATGCCAGACCAAGCCCTTCAAGCATTTATCGATCATGGTACCGTATCCAGGACAATAGACTCAAATGCATCTGAAGCTGAAGGAATATAC-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110385556|gb|EC950092.1|EC950092
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|34544909|gb|CF513141.1|CF513141
EST:     ACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATCCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: ACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110425273|gb|EC991655.1|EC991655
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33410187|gb|CF215814.1|CF215814
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110732932|gb|EE108661.1|EE108661
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|161720858|gb|FC069604.1|FC069604
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33404929|gb|CF210556.1|CF210556
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|45770967|gb|CN006819.1|CN006819
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33404431|gb|CF210058.1|CF210058
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110361653|gb|EC925142.1|EC925142
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|56409396|gb|CX017648.1|CX017648
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110374253|gb|EC938912.1|EC938912
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110725283|gb|EE101604.1|EE101604
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110685775|gb|EE062800.1|EE062800
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTTCA-CCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTT-CAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGT
EST: gi|71882129|gb|DT031184.1|DT031184
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30252995|gb|CB970546.1|CB970546
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33407464|gb|CF213091.1|CF213091
EST:     ACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: ACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|18459426|gb|BM437704.1|BM437704
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110716137|gb|EE090854.1|EE090854
EST:     CCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110394314|gb|EC959076.1|EC959076
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110426431|gb|EC992841.1|EC992841
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30320765|gb|CD004027.1|CD004027
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30296452|gb|CB973246.1|CB973246
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|34544832|gb|CF513064.1|CF513064
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110427818|gb|EC994269.1|EC994269
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110390253|gb|EC955153.1|EC955153
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110687643|gb|EE065283.1|EE065283
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|37188746|gb|CF608095.1|CF608095
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|51051725|gb|CO819200.1|CO819200
EST:     TATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: TATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110363280|gb|EC926857.1|EC926857
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTTTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|83275156|gb|DV939252.1|DV939252
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|45771745|gb|CN007597.1|CN007597
EST:     CTGCCTACCCTGACACACTATACGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|34544278|gb|CF512510.1|CF512510
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|51052055|gb|CO819367.1|CO819367
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110700719|gb|EE077621.1|EE077621
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30133825|gb|CB919164.1|CB919164
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33404504|gb|CF210131.1|CF210131
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|56409430|gb|CX017682.1|CX017682
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|45771011|gb|CN006863.1|CN006863
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|45368195|gb|CK906554.1|CK906554
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33407548|gb|CF213175.1|CF213175
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110417622|gb|EC983692.1|EC983692
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|71874490|gb|DT023545.1|DT023545
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33405013|gb|CF210640.1|CF210640
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33401677|gb|CF207304.1|CF207304
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30136217|gb|CB921555.1|CB921555
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|33401595|gb|CF207222.1|CF207222
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30134026|gb|CB919364.1|CB919364
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110714428|gb|EE091325.1|EE091325
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30136612|gb|CB921950.1|CB921950
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|352795399|gb|FQ476514.1|FQ476514
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|56408961|gb|CX017213.1|CX017213
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|45771007|gb|CN006859.1|CN006859
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|34319647|gb|CF372401.1|CF372401
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACCCG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110688023|gb|EE066103.1|EE066103
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|37188142|gb|CF607493.1|CF607493
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110425862|gb|EC992257.1|EC992257
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|56409703|gb|CX017955.1|CX017955
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30297221|gb|CB974015.1|CB974015
EST:     CTGCCTACCCTGACACACTATATGGGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110420254|gb|EC986520.1|EC986520
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110701885|gb|EE079969.1|EE079969
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAACTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110362382|gb|EC925912.1|EC925912
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110413979|gb|EC979799.1|EC979799
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110423538|gb|EC989885.1|EC989885
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|30297263|gb|CB974057.1|CB974057
EST:     TATATGGGTCTCCTTTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: TATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|222357010|gb|GH717872.1|GH717872
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|34319381|gb|CF372135.1|CF372135
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|110722800|gb|EE099382.1|EE099382
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCTGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
EST: gi|56409588|gb|CX017840.1|CX017840
EST:     CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACG                         GTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT
genomic: CTGCCTACCCTGACACACTATATGTGTCTCCTCTTATTGGACCCGACACGgtgagccttc ... cctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttaaacagttccataaataaggtccataatttactgccaacttcctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTTGTTTCAAGGACAATTGATTCCAATGTATCTGAAGCTGAAGGCATTTACA
                                      ccaacttcctttttc  CT-rich tract
                           ataatttact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagccttcttatattgcaacctcagttggatttggcagtaattgttgtcagcatcctaagaaagttatctaccatttacttaaacagttccataaataaggtccataatttactgccaacttcctttttcagGTTTCAACCATGCCCGACCAAGCTCTCCAAGCATTTGTTGACCATGGTGTTGTTTCAAGGACAATTGATTCCAATGTATCTGAAGCTGAAGGCATTTACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG