Sequence
atgc intronic sequence ATGC exonic sequencegttgatttctccccctctcctctctgctactaaatttgtctctcttctgctactaaatgtctgttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 6
-------gttgatttctccccctctcctctctg----ctactaaatttgtctctcttctgctactaaatgtctgttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
||| ||||| || || | | || || || |||| | || || ||| || | | |||||||| ||| ||||||| || ||||||||||||||||||| | ||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||
gtcatctgttagtttctttttctttctgatgtataaacttctgtatgggtctttaaacta--gctcaattact-tggaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCCACACAACTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTTC
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G14050.1 (Glycine max), 3'ss of exon 4
---gttgatttctccccctctcctctctgctactaaatttgtctctcttctgcta--ctaaat--gtctgttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
| | | | | | || |||||| || |||| | ||| ||| || ||| ||| ||||| || ||||||| || |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| || ||||
gttttctctcttttctcttcctctctctctgtgtaggcttgtgtacgcatgtctaaactagatatgtcacttgaacagTTTTCAAAGGACTTCACAATCCTTCTGTTTCATTATGATGGCCGAACAACAGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTC
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 6
-------gttgatttctccccctctcc----tctctgctactaaat--ttgtctctcttctgctactaaat--gtctgttgtg-cagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
||| ||||| || || | ||| | || ||| | | | |||| | | |||| |||||||| ||| ||||||| || ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||| ||||||||||| || |
gtcatctgttagtttctttttctttctgatgcataagcttgtgtatgactgtatgggtctttaaactagctccattacttgtaacagTTCTCAGAGAACTTTACAATAGTTCTATTTCATTATGATGGCAAAACAACTGAATGGGGTGAGTTTGAGTGGTCAAAGCGGGCAATTCATGTGAGTGTCC
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G30850.1 (Glycine max), 3'ss of exon 4
gttgatttctccccctctcctctctgctactaaatttgtctct---cttctgct---actaaat--gtctgttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
||| | | | |||||||| || || || | | | || | |||| || | | ||| ||||| || |||| || || |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| || ||||
gttctctccctttctcttcctctctttctctgcataggtttgtgaacgcgtgtttaaactagatatgccacttgaacagTTTTCAAAGGATTTCACGATCCTTCTGTTTCATTATGATGGCCGAACAACGGAATGGGATGAATTTGAGTGGTCAAAACAGGCCATTCATGTCAGTGTTC
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA11G37770.1 (Glycine max), 3'ss of exon 6
------gttgatttctccccctctcctctctgctactaaatttgtctctcttctgctactaaatgtctgttgtg-cagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
| || | || ||||| | | ||| | | | | | | | | ||| | | || | | ||||| || | | |||| || || || ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| ||| ||||||||||| ||||
gtcttaatcagttcattcctctctc-tgtttgcatatgcttgtttatgtgtcttttaactgagaatttgctttaacagTTTTCAGGGAACTTCACTATTCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTGAGTGTTC
upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 6
------gttgatttctccccctctcctctctgctactaaatttgtctctcttctgctactaaatgtctg-ttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
| || | || ||||| | | ||| | | | | | | | | ||| || | || ||| ||||| || | | |||| || ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| ||| |||||||| || ||||
gtcttaatcagttcattcctctctc-tgtttgcatatgcttgtttatgtgtcttttaactgaaaatttgcttgaacagTTTTCAGGGAACTTCACTATCCTGCTATTTCATTATGATGGCCGAACTACTGAATGGGATGAGTTTGAATGGTCAAAGCAGGCTATTCATGTCAGTGTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcctctctgctactaaatttgtctctcttctgctactaaatgtctgttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
tactaaa putative branch site (score: 1)
tactaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgatttctccccctctcctctctgctactaaatttgtctctcttctgctactaaatgtctgttgtgcagTTCTCTGAGGACTTTACCATCCTTCTATTTCATTATGATGGTCGAACAACTGAATGGGATGAATTTGAGTGGTCAAAGAGGGCCATTCATGTGAGCGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG