1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattggtttttcatctcttcttgtaaaagatttcttctttcctaagtagcaatccatttgaagtgaaacaatataatgtttttgtaagatttcatgctttaacttgtgaatgcttatatgttctgatgtatgattttttatgctcccttttactcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGACAACATTTCTGTGAAGAGGATTGGTCAAAGTTGAAAAGGAAGTATTATT
species | Vitis vinifera |
transcript | Vv01s0026g02490.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG TTCTTCGGGTTGGGTTCAAGGGCATTTCTCEST: gi|110356657|gb|EC919644.1|EC919644
genomic: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGgtattggttt ... actcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTC
EST: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG TTCTTCGGGTTGGGTTCAAGGGCATTTCTCTCTGATCTGACGGTGGCTGGAEST: gi|30320456|gb|CD003718.1|CD003718
genomic: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGgtattggttt ... actcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGA
EST: AGCTTCAAGGAAAGTTTNTGGCAACAGAAAATTTCTTTTATACATCAAAG TTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGAEST: gi|110703130|gb|EE079707.1|EE079707
genomic: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGgtattggttt ... actcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGA
EST: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG TTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGAEST: gi|110359018|gb|EC919806.1|EC919806
genomic: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGgtattggttt ... actcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGA
EST: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG TTCTTCGGGTTGGGTTCAAGGGCATTTCTCTCTGATCTGACGGTGGCTGGAEST: gi|110383305|gb|EC947670.1|EC947670
genomic: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGgtattggttt ... actcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGA
EST: AAATTTCTTTTATACATCAAAG TTCTTCGGGTTGGGTTCAAGGGCATTTCTCTCTGATCTGACGGTGGCTGGAEST: gi|110357251|gb|EC920660.1|EC920660
genomic: AAATTTCTTTTATACATCAAAGgtattggttt ... actcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGA
EST: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG TTCTTCGGGTTGGGTTCAAGGGCATTTCTCTCTGATCTGACGGTGGCTGGAEST: gi|110383715|gb|EC948106.1|EC948106
genomic: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGgtattggttt ... actcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGA
EST: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAG TTCTTCAGGTTGGGTTCAAGGGCATTTCTCTCTGATCTGACGGTGGCTGGA
genomic: AGCTTCAAGGAAAGTTTTTGGCAACAGAAAATTTCTTTTATACATCAAAGgtattggttt ... actcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGA
tgaatgcttatatgttctgatgtatgattttttatgctcccttttactcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGACAACATTTCTGTGAAGAGGATTGGTCAAAGTTGAAAAGGAAGTATTATT
ttctgat putative branch site (score: 3)
ttttttatgctccctt putative PPT
atgtatgattttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattggtttttcatctcttcttgtaaaagatttcttctttcctaagtagcaatccatttgaagtgaaacaatataatgtttttgtaagatttcatgctttaacttgtgaatgcttatatgttctgatgtatgattttttatgctcccttttactcaattagTTCTTCGGGTTGGGTTCACGGGCATTTCTCTCTGATCTGACGGTGGCTGGACAACATTTCTGTGAAGAGGATTGGTCAAAGTTGAAAAGGAAGTATTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA