1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatataaaggcttcatcttgcatcaacccacattggtcaaccaacattcagcttatcctttgtctattaaattgatttatggttctttgctgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATTGCAGATAAAGCGAGCTGAGGGAGATGCAGAATCCAAGTACCTGGCTGG
species | Vitis vinifera |
transcript | Vv01s0026g01640.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCTAGAAATGAGGTTGGCTGCTACTGAGAAGGCEST: gi|26262182|gb|CA813245.1|CA813245
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAA-TGAGGTTGGCTGCTACTGAGAAGGC
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCTAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|110400525|gb|EC967091.1|EC967091
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCTAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|110724693|gb|EE100742.1|EE100742
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|110423580|gb|EC989927.1|EC989927
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|110425409|gb|EC991794.1|EC991794
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|32250322|gb|CD716141.1|CD716141
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: GAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|110697820|gb|EE075232.1|EE075232
genomic: GAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCTAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|27580089|gb|CB002784.1|CB002784
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: GAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|110382334|gb|EC939189.1|EC939189
genomic: GAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCTAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|110687599|gb|EE065191.1|EE065191
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAA-ATATEST: gi|110389091|gb|EC953904.1|EC953904
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCTAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATEST: gi|161715489|gb|FC069052.1|FC069052
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCTAGAATGAGGTTGGCTGCTACTEST: gi|110375966|gb|EC940998.1|EC940998
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACT
EST: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAG CTTCTAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
genomic: TATCGAACCAGATGAGCATGTGAAAAGAGCAATGAATGAGATAAATGCAGgtattttgtt ... tgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATAT
attcagcttatcctttgtctattaaattgatttatggttctttgctgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATTGCAGATAAAGCGAGCTGAGGGAGATGCAGAATCCAAGTACCTGGCTGG
aattgat putative branch site (score: 4)
ttctttgct putative PPT
tttgtctattaaattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatataaaggcttcatcttgcatcaacccacattggtcaaccaacattcagcttatcctttgtctattaaattgatttatggttctttgctgtaaaatagCTTCAAGAATGAGGTTGGCTGCTACTGAGAAGGCCGAAGCTGAGAAGATATTGCAGATAAAGCGAGCTGAGGGAGATGCAGAATCCAAGTACCTGGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- -ataaagg
- - - - - - - - cttgcat
- - - - - - - - - - - -caaccca
- - - - - - - - - - - - - - - - - - tcaacca
- - - - - - - - - - - - - - - - - - - - - - cattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga