Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatacttgactatgctttccaacgtattttagatgaactgcagtttcttcagatttaaaccatgtttttctgctcctttctcagGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAATGCCTCTGGCAAG

Basic information

species Vitis vinifera
transcript Vv01s0026g01590.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720305|gb|FC071158.1|FC071158
EST:     GAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAATTACAG                         GAAGGATAGGAGTTCATTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
genomic: GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAGgttgatactt ... cctttctcagGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
EST: gi|22010530|gb|BQ795564.1|BQ795564
EST:     GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAG                         GAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
genomic: GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAGgttgatactt ... cctttctcagGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
EST: gi|254917156|gb|GR905982.1|GR905982
EST:     GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAG                         GAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
genomic: GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAGgttgatactt ... cctttctcagGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
EST: gi|110427355|gb|EC993791.1|EC993791
EST:     GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAG                         GAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
genomic: GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAGgttgatactt ... cctttctcagGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
EST: gi|110379815|gb|EC945035.1|EC945035
EST:     GAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAATTACAG                         GAAGGATAGGAGTTCATTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
genomic: GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAGgttgatactt ... cctttctcagGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
EST: gi|71859761|gb|DT008816.1|DT008816
EST:     GAAAGCATCCAAACTGAGAAAGCATGCACAGTACGTATCTTAAATTACAG                         GAAGGATAGGAGTTCATTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA
genomic: GAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAGgttgatactt ... cctttctcagGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatgaactgcagtttcttcagatttaaaccatgtttttctgctcctttctcagGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAATGCCTCTGGCAAG
                              ccatgtttttctgctc  CT-rich tract
                     agatttaaa  TA-rich tract