Sequence
atgc intronic sequence ATGC exonic sequencegtatgcagttgatcttaccatatactaagattctagttgtaactgagccaacagtctcagaattaattctatttgattttcattttggaaatggaggtagGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G03410.1 (Glycine max), 3'ss of exon 5
gtatgcagttgatcttaccatatactaagattctagttgtaactgagccaacagtctcagaattaattctatttgattttcattttggaaatggaggtagGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAA
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gtatgcaatttacctaagcttattctataagaccatagatgcctgagtg------ttcaagtcttattct----gatttgtttcttggaaatggaggcagGGATTTTCAAGTCTGGCCGGGGCACTTCTTGAGAATAACAGTATACGAAATATACATCTCAA
upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G04270.1 (Glycine max), 3'ss of exon 3
gtatgcagttgatcttaccatatactaagattctagttgtaactgagccaacagtctcagaattaattctatttgattttcattttggaaatggaggtagGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAA
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gtatgcaatttacctaagcttattctaaggccatagttgc--ctgagt-----gtctaaatcttattttgatttgtttct-----tggaaatggaggcagGGATTTTCAAGTCTGGCCGGGGCACTTCTTGAGAATAACAGTATACGAAATATACATCTCAA
upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G10510.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatgcagttgatcttaccatatactaagattctagttgtaactgagccaaca-gtctcagaattaattctatttgattttcat---------tttggaaatggaggtagGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAA
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gtaagttttttctgttcatgtgttgtacagttatatttcagattgacataccaagtttatgaattaaatctgttgcgtcttcttcccttctttttttgaaatggaggtagGGATTCACAAGTCTTGCTGGAGCTCTTCTTGAGAATAATACAATACGCAATTTACATCTCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agccaacagtctcagaattaattctatttgattttcattttggaaatggaggtagGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAA
agaattaattctattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcagttgatcttaccatatactaagattctagttgtaactgagccaacagtctcagaattaattctatttgattttcattttggaaatggaggtagGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA