1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtcctctctctctctctctctctctctctactcagtactctctctctctctcttctcagtactctccctctctctccatcaagtacttacaagtaccattttgccatttattttctctcattcatggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTACATTGAAAGCATCCCAGGAGTGCTGTTGCCACACCCATCACCTTCGCCTT
species | Vitis vinifera |
transcript | Vv01s0026g00350.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTTCACAAG GTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTACEST: gi|110416844|gb|EC982850.1|EC982850
genomic: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACAAGgtcctctctc ... ggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTAC
EST: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTTCACAAG GTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTACEST: gi|110711993|gb|EE089106.1|EE089106
genomic: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACAAGgtcctctctc ... ggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTAC
EST: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACA-G GTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTT-GGTTACEST: gi|110402919|gb|EC963794.1|EC963794
genomic: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACAAGgtcctctctc ... ggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTAC
EST: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTTCACAAG GTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTACEST: gi|71866843|gb|DT015898.1|DT015898
genomic: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACAAGgtcctctctc ... ggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTAC
EST: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTTCACAAG GTGATTGAAGACCTGAGTTATGTCGTTCTACTAEST: gi|110702512|gb|EE081308.1|EE081308
genomic: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACAAGgtcctctctc ... ggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTA
EST: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACAAG GTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTACEST: gi|77581829|gb|DV219868.1|DV219868
genomic: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACAAGgtcctctctc ... ggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTAC
EST: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTAGGAGCTGTTCACAAG GTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAATTTGGTTAC
genomic: CGCTGATTGCAGTTAGAGAAGGTGTCATTCAATTGGGAGCTGTTCACAAGgtcctctctc ... ggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTAC
aagtacttacaagtaccattttgccatttattttctctcattcatggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTACATTGAAAGCATCCCAGGAGTGCTGTTGCCACACCCATCACCTTCGCCTT
tacttac putative branch site (score: 1)
atttattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcctctctctctctctctctctctctctactcagtactctctctctctctcttctcagtactctccctctctctccatcaagtacttacaagtaccattttgccatttattttctctcattcatggaattcaagGTGATTGAAGACCTGAGTTATGTCGTTCTACTAAGAAAGAAGTTTGGTTACATTGAAAGCATCCCAGGAGTGCTGTTGCCACACCCATCACCTTCGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT