Sequence
atgc intronic sequence ATGC exonic sequencegtttgttgcgtatgtagttgggagttgatttcatttgtgcttgcaaatctattttctgttttacttaggcgtctgtaatttccagGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G03750.1 (Glycine max), 3'ss of exon 5
----------------------gtttgttgcgtatgtagttgggagttgat--ttcatttgtgc---ttgcaaatctattttctgttttacttag-gcgtctgtaatttccagGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAG
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gtacgtataaactattttatcagtctac--catttctagttttgatttatccattaacttatgtcaatggcaagtactttggtttcattggttattgtatttggaatt-ccagGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTAAAG
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 5
--------------gtttgttgcgtatgtagttgggagttgatttcatttgt--gcttgcaaat---ctattttctgttttacttag-----gcgtctgtaatttccagGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAG
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gtatgcttaaactatcttatcatgcaaccatttctacttttgatttatccattaacatatcaatgacaagtactttggtttaattggttatcgtgtttggaatttc-agGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGGGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAAAGTCTGAAG
upper sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G26830.1 (Arabidopsis thaliana), 3'ss of exon 6
---gtttgttgcgtatgtagttgggagttgatttcatttgtgcttgcaaatctattttctgttttacttaggcgtctgtaatttccagGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAG
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gtgatttgctac-tgtatctctaggagctacatc--tctacagattctagtttgttttct--tatgctgaccaatatatttttctcagGCCTCATCAGCTTACTGGAAGGGTGACAAAGACCGTGAGAGCTTGCAGAGAGTTTATGGGATATCTTATCCTGATCAGAAGCAGCTGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|156735898|gb|EV240019.1|EV240019EST: GACCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAG GCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGA
genomic: GGCCCCATATACCAAATACATCTTTTGTTAAAGCATTTGCCTGTTTGAAGgtttgttgcg ... taatttccagGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatttgtgcttgcaaatctattttctgttttacttaggcgtctgtaatttccagGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAG
tttcc CT-rich tract
tattttctgtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttgttgcgtatgtagttgggagttgatttcatttgtgcttgcaaatctattttctgttttacttaggcgtctgtaatttccagGCTTCATCAGCTTACTGGAGAGGAAATAAAGATCGTGAGAGTTTGCAAAGAGTTTATGGGATATCTTATCCTGATTCAAAACGATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG