1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgttaaagagttcttgtctaacttctaatgcatccctgtattatcactaccagggggttattccttaatttttactttgaaagtttggatatcatttagGAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGTCTGTGGTCTCCATCTCCTCCTCTAGAATTGAGGGGTACTGCTGGTGAAG
species | Vitis vinifera |
transcript | Vv01s0011g05400.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGAGATTCAAGGACTCCATAGATACTGTTCTTGCAACATCCTTCCTTCAG GAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGTEST: gi|110362276|gb|EC925797.1|EC925797
genomic: TGAGATTCAAGGACTCCATAGATACTGTTCTTGCAACATCCTTCCTTCAGgtatggtgtt ... tatcatttagGAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGT
EST: TGAGATTCAAGGACTCCATAGATACTGTTCTTGCAACATCCTTCCTTCAG GAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGT
genomic: TGAGATTCAAGGACTCCATAGATACTGTTCTTGCAACATCCTTCCTTCAGgtatggtgtt ... tatcatttagGAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGT
cactaccagggggttattccttaatttttactttgaaagtttggatatcatttagGAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGTCTGTGGTCTCCATCTCCTCCTCTAGAATTGAGGGGTACTGCTGGTGAAG
ccttaat putative branch site (score: 4)
ttaatttttactttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttaaagagttcttgtctaacttctaatgcatccctgtattatcactaccagggggttattccttaatttttactttgaaagtttggatatcatttagGAATTTGTTGAAGCAAGACGCACAGCTGGACTGAATAATGCTCCTCCTTGTCTGTGGTCTCCATCTCCTCCTCTAGAATTGAGGGGTACTGCTGGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - -aaagagt
- - - - - - - - - - - - - - - -catccct
- - - - - - - - - - - - - - - - - - - - - - -cactacc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gggggtt