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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctatctcaaatacacttgtcctacaacgtttgtcataaccatggtctttttcgatcacttttgacaagaaaactaaaataaagtctttttgcttcttggcttcgtatgctaaagGTTGGGTATAAGGTCCGGCTAGAGGGCATGAAAGGAAAGGATACTTGCCTTCTATTTTGCACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGA

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 1
gtgagtttctatctcaaatacacttgtcctacaacgtt-tgtcataaccatggtctttttcgatcacttttgacaagaaaactaaaataaa-gtctttttgcttcttggcttcgtatgctaaagGTTGGGTATAAGGTCCGGCTAGAGGGCATGAAAGGAAAGGATACTTGCCTTCTATTTTGCACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGA
|||||||| |    |||| ||| ||    |  |    | |  ||   | ||  | || |   ||    | ||    | ||  ||||  |   |||| |    |  ||| |||| | |   ||||||||| ||||| ||  | || || || |||| ||| |  ||||||   ||||| |||||||||||||||||||| || ||||||||||| | |||||| |
gtgagttttt----caaagacagttactgtttattactattccagcgcaataattttctgttatatagtctgtt--ggaatttaaagcatctgtctctcctttgtttgacttcttttctgaaagGTTGGATATAAAGTTAGACTTGAAGGTATGAGAGGGAGAGATACTCATCTTCTCTTTTGCACCACAGGCATCTTATTAAGAAGATTACTAGATGATAGAA

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 9
-----------------------------gtgagtttctatctcaaatacacttgtcctacaacgtttgtcataaccatggtctttttcgatcacttttga-----caagaaaactaaaataaagtctttttgcttct-tggcttcgtatgctaaagGTTGGGTATAAGGTCCGGCTAGAGGGCATGAAAGGAAAGGATACTTGCCTTCTATTTTGCACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGA
                              | |  | ||||| |||   | |||    | |    ||| | | ||     || ||| ||  |  || |||      |    |   |         ||| | ||  ||| |  || | |     ||||||||| ||||| || || || ||||| |||||||| |  |||||    ||||| ||||||||||||||||| || || ||||||||||| | |||||| |
gttagtttatctgccaaagacaactattcttaatatactatcccaac--ctcttactgttctgt-tttcttagaatttcagtatttctccctatctgttggttgctctcacactttctctctctctctctctgtctctatctctccctccttgaaagGTTGGATATAAAGTTCGACTTGAGGGTATGAAAGGGAGAGATACCCATCTTCTCTTTTGCACCACAGGCATTTTATTAAGAAGATTACTAGCTGATAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgacaagaaaactaaaataaagtctttttgcttcttggcttcgtatgctaaagGTTGGGTATAAGGTCCGGCTAGAGGGCATGAAAGGAAAGGATACTTGCCTTCTATTTTGCACCACAGGCATCTTGTTGAGAAGATTACTGGTTGATAGGA
           aactaaa  putative branch site (score: 2)
         aaaactaaaataaagt  TA-rich tract