1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaaagaaaatgcagattgaagtgtgctctgtctttttagtttaccaaatgaatagtacatgtgtttttctcgtatctgatgaaatatgattgctctgcagGGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTCAAGCATTTGACCGCAAAGGGCATGTTGCAAAACTATGCATTGTTTTCCT
species | Vitis vinifera |
transcript | Vv01s0011g04160.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGT GGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTCEST: gi|161710506|gb|FC059357.1|FC059357
genomic: TAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGTgtaagctaca ... tgctctgcagGGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTC
EST: AGAGCTTCCCAAGTGGTCACACTTCGT GGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTCEST: gi|110364780|gb|EC928276.1|EC928276
genomic: AGAGCTTCCCAAGTGGTCACACTTCGTgtaagctaca ... tgctctgcagGGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTC
EST: TAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGT GGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTCEST: gi|71856392|gb|DT005447.1|DT005447
genomic: TAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGTgtaagctaca ... tgctctgcagGGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTC
EST: TAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGT GGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTC
genomic: TAGCATTATAAGGGAGGGACATAAGAGCTTCCCAAGTGGTCACACTTCGTgtaagctaca ... tgctctgcagGGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTC
aaatgaatagtacatgtgtttttctcgtatctgatgaaatatgattgctctgcagGGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTCAAGCATTTGACCGCAAAGGGCATGTTGCAAAACTATGCATTGTTTTCCT
atctgat putative branch site (score: 4)
ttgctct putative PPT
aaatatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagaaaatgcagattgaagtgtgctctgtctttttagtttaccaaatgaatagtacatgtgtttttctcgtatctgatgaaatatgattgctctgcagGGTCCTTTGCAGGCCTGGGTTTCCTATCATTGTACTTATCAGGAAAGATTCAAGCATTTGACCGCAAAGGGCATGTTGCAAAACTATGCATTGTTTTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- aagaaaa
- - - - -tgcagat
- - - - - - - - - - - - - - - - - - - - -taccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaata