1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaattctagaggttgttatcaggaagatttaacaagtatttattgattatgctgttacatgtaggcataaccaatattaaaattttcatcaactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCGATTGTTGGCATGAAATTGCTCGCCCTCAAGTTCATGGTCATGACATTA
species | Vitis vinifera |
transcript | Vv01s0011g04130.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|349832389|gb|FQ420950.1|FQ420950
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|34547373|gb|CF515605.1|CF515605
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|351054132|gb|FQ450214.1|FQ450214
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|351038018|gb|FQ460760.1|FQ460760
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|351016289|gb|FQ446149.1|FQ446149
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|351036140|gb|FQ463985.1|FQ463985
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|352793961|gb|FQ479203.1|FQ479203
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|110371641|gb|EC935756.1|EC935756
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|351054298|gb|FQ450381.1|FQ450381
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|351043253|gb|FQ443974.1|FQ443974
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCEST: gi|349817591|gb|FQ407381.1|FQ407381
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
EST: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAG ACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
genomic: TTGCATGGGCCAGGTCTGGTGAATATTTGCTCTCAGTCAGTGCTGACCAGgtaatttgtt ... aactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGC
attatgctgttacatgtaggcataaccaatattaaaattttcatcaactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCGATTGTTGGCATGAAATTGCTCGCCCTCAAGTTCATGGTCATGACATTA
gcataac putative branch site (score: 3)
aatattaaaattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattctagaggttgttatcaggaagatttaacaagtatttattgattatgctgttacatgtaggcataaccaatattaaaattttcatcaactttgcagACAACTCGAATTTTTGCATCTTGGCAAAATGAAGCTAGTTTTGGAGGTAGCGATTGTTGGCATGAAATTGCTCGCCCTCAAGTTCATGGTCATGACATTA
- - - - - - - - - - aggaaga
- - - - - - - - - - - - - - - aacaagta
- - - - - - - - - - - - - - - - - - - - - - - -tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa