Sequence
atgc intronic sequence ATGC exonic sequence...caagtacccctgagttgaactctgtatttttaggttgtatcagtttttgtcttctaatgattaccttaattctctctcaacgattacttttctgattcagGTCATCGGTTTGGAGAGATACTTGATGGTCGATATGAAATTACTGCTGCCCATGGAAAAGGTGTCTTTTCAACAGTAGTTCGCGCAAAGGATCTTAAGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G42220.1 (Glycine max), 3'ss of exon 11
caagtacccctgagttgaactctgtatttttaggttgtatcagtttttgtcttctaatgattaccttaattctctctcaacgat----tacttttctgattcagGTCATCGGTTTGGAGAGATACTTGATGGTCGATATGAAATTACTGCTGCCCATGGAAAAGGTGTCTTTTCAACAGTAGTTCGCGCAAAGGATCTTAAGGC
||| || | | | ||| | | | | | | ||| | || || | || | || | | || | | |||| |||| |||| || ||||||||||| ||||||||| | |||||||| ||||| | ||||||||||||||||| ||||||| |||| |||| |||
----aacctttgggggctatctgatttttgttgcaattgttggaaaatctctggatacatttgtttttctgttcatgatattatgctgtgatattgttgtgcagGCTATCGTATTGGTGAAATACTTGATGGCCGATATGAAGTCACTGCTGCACATGGGAGGGGTGTCTTTTCAACAGTTGTTCGCGGAAAGAATCTAAAGAT
upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G24820.1 (Glycine max), 3'ss of exon 8
caagtacccctgagttgaactctgtatttttaggttgtatcagtttttgtcttctaatgattaccttaattctctctcaacgat---------tacttttctgattcagGTCATCGGTTTGGAGAGATACTTGATGGTCGATATGAAATTACTGCTGCCCATGGAAAAGGTGTCTTTTCAACAGTAGTTCGCGCAAAGGATCTTAAGGC
| | | || | |||| |||||| |||| | ||| | ||| || || ||| | | ||| | | || | || |||| |||| |||| || ||||||||| | ||||||||| | || ||||| ||||| | ||||||||||| ||||| ||||| |||||| |||| |||
-----aatctttggtggctatctg-attttt--gttgcaattgttggaaaatctctg-gatacatttgtttttctgttcatgatattatgctgtgatattgttatgcagGCTATCGTATTGGTGAAATACTTGATAGCCGATATGAAGTCACAGCTGCACATGGGAGGGGTGTCTTTTCGACAGTTGTTCGGGCAAAGAATCTAAAGAT
upper sequence: Vv01s0011g03350.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 3'ss of exon 6
caagtacccctgagttgaactctgtatttttaggttgtatcagtttttgtcttctaatgattaccttaattctctctcaacgatta---cttttctgattc-agGTCATCGGTTTGGAGAGATACTTGATGGTCGATATGAAATTACTGCTGCCCATGGAAAAGGTGTCTTTTCAACAGTAGTTCGCGCAAAGGATCTTAAGGC
|| ||| |||| |||| | || || || | | | | | || || || | || |||| || ||| || ||| ||| |||||| ||| ||||||||||| |||||||| | | |||| | ||||||||||||||||| || || || ||||| || || || | || ||
-----gtaagtgtgtttctctctacatttcaatcatgaat-ggtgaacgcacttttacgttttattt--tttcgttgtaaagattgagtctcctctccttttagGCTATCAGTTTGGCGAGTTACTTGATGGTAGATATGAAGTCATTGCTACTCATGGAAAAGGTGTCTTCTCTACTGTGGTTCGTGCTAAAGACTTGAAAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtcttctaatgattaccttaattctctctcaacgattacttttctgattcagGTCATCGGTTTGGAGAGATACTTGATGGTCGATATGAAATTACTGCTGCCCATGGAAAAGGTGTCTTTTCAACAGTAGTTCGCGCAAAGGATCTTAAGGC
ttacttttct CT-rich tract
taatgatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caagtacccctgagttgaactctgtatttttaggttgtatcagtttttgtcttctaatgattaccttaattctctctcaacgattacttttctgattcagGTCATCGGTTTGGAGAGATACTTGATGGTCGATATGAAATTACTGCTGCCCATGGAAAAGGTGTCTTTTCAACAGTAGTTCGCGCAAAGGATCTTAAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - cccctga
- - - - - - - - - -ctctgta
- - - - - - - - - - - - - - - - - - - - - - - -tgtcttc