1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttgttgcatttctgggaagaaaaagagcatgcaagtttatagttcctcccacatcttgtttctaacattgcttgaactgaaagcttcataattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGGACATGGGAAAATTCCTTCACATGCCATTGTGTTTTTCATTTCCGAGTT
species | Vitis vinifera |
transcript | Vv01s0011g01610.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG GAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGEST: gi|110389333|gb|EC954162.1|EC954162
genomic: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTGgtaaacttgt ... aattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTG
EST: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG GAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGEST: gi|349818483|gb|FQ403118.1|FQ403118
genomic: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTGgtaaacttgt ... aattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTG
EST: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG GAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGEST: gi|110384323|gb|EC948751.1|EC948751
genomic: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTGgtaaacttgt ... aattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTG
EST: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG GAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGEST: gi|71867022|gb|DT016077.1|DT016077
genomic: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTGgtaaacttgt ... aattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTG
EST: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG GAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGEST: gi|349818522|gb|FQ403157.1|FQ403157
genomic: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTGgtaaacttgt ... aattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTG
EST: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG GAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGEST: gi|110379724|gb|EC944942.1|EC944942
genomic: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTGgtaaacttgt ... aattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTG
EST: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTG GAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTG
genomic: TACTAGGTGGGAGACAGATGAAATGGCCGCCTGGTTGAAGATTTGAATTGgtaaacttgt ... aattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTG
cctcccacatcttgtttctaacattgcttgaactgaaagcttcataattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGGACATGGGAAAATTCCTTCACATGCCATTGTGTTTTTCATTTCCGAGTT
ttctaac putative branch site (score: 1)
ttcataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttgcatttctgggaagaaaaagagcatgcaagtttatagttcctcccacatcttgtttctaacattgcttgaactgaaagcttcataattgtgcagGAAATATTGTCAACATCGTGAAAGGATGAAGTGATCCAATAAAGACATTTGGACATGGGAAAATTCCTTCACATGCCATTGTGTTTTTCATTTCCGAGTT
- - - gcatttc
- - - - - - - - -aagaaaa
- - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga