Sequence
atgc intronic sequence ATGC exonic sequence...gatgtttcatgtgttttttatgccctgttatgcatctttctgagagatttccttttgtaaaccgtaaagaatgagccttattcttgaaatgatgactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G015073_T01 (Zea mays), 3'ss of exon 1
-------gatg-tttcatgtgttttttatgcc--ctgttatgcatctttctgagagatttccttttgtaaaccgtaaagaatgagccttattcttgaaatgatgactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
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gtgaggtgatgactccgcatgtccttaatgctgattatttta-atttttctgtgtcatattgtttggc---tccagaataatga-cattgcactcacat-----attcagGTGGAAGACGTACAATCGGCAGTAGTTGGTTGTCTGTCAGTCAAGGTATTGCAGAAGATACCTCCGATCTGGTATCTGGTTTTGCAACACTTGCTGACGA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA05G33560.1 (Glycine max), 3'ss of exon 1
gatgtttcatgt--gttttttatgccctgttatgcatctttctgagagatttccttttgtaaaccgtaaagaatgagccttattcttgaaatgatgactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
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--tttctgattttggaatctgattgcccatacttattttttgctggagacacttgtttggatgtgctgaagactgtatttgactttttcatatatgcttcagGTATGAGGAGGGCTACAGGGGGCAGTTGGTTATCTGTAAGTCAAGGGATAGCAGAGGATACATCTGATCTTGTATCAGGATTTGCTACAGTTGGTGATGG
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA16G34510.1 (Glycine max), 3'ss of exon 1
----gatgtttcatgtgttttttatgccctgttatgcatctttctgagagatttccttttgtaaaccgtaaagaatgagccttattcttgaaatgatgactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
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ccatgacattaaggcctttgcttcaattcttttcccgctagaactaacataaa-ctatttgtg---catattgaatgattttgactttttcatatatgtttcagGTGTGAGGAAGGCTGTAGGGGGCAGTTGGCTGTCTGTAAGTCAAGGGATTGCAGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAATTGGGGATGG
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA08G06160.1 (Glycine max), 3'ss of exon 3
gatgtttcatgtgttttttatgccctgttatgcatc---tttctgagagatttccttttgtaaaccg--taaagaatgagccttattcttgaaatgatgactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
|| || |||| || | |||| | ||| | ||| ||| | | | | |||| || | | | || | ||| |||||| | | | |||||| ||||| |||||||||||||||| || || |||||||| |||||||| || || || |||||||| |||||||| |
-----tttctgatttttgaatctgattgtatgtacttattttttacttgatacgcttgttcagatgtgctgaagactgtatttgactttttcatatatgcttcagGTATGAGGAAGGCTACAGGGGGCTGTTGGTTATCTGTAAGTCAAGGGATAGCGGAGGATACATCTGATCTTGTATCAGGATTTGCTACAGTTGGTGATGA
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G29970.1 (Glycine max), 3'ss of exon 1
--gatg-tttcatgtgttttttatgccctgttatgcatctttctgagagatttccttttgtaaaccgtaaagaatgagccttattcttgaaatgatgactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
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accatgacattattgcttttgcttcctctgttttccgctagaactaacatcaacaatttgtg---catattcaatgattttgactttttcatatatgtttcagGTGTGAGGAAGGCTATAGGGGGCAGTTGGTTGTCTGTAAGTCATGGGATTACAGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAATTGGGGATGG
upper sequence: Vv01s0011g01590.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 3'ss of exon 1
-gatgtttca-tgtgttttttatgccctgttatgcatctttctgagagatttccttttgtaaaccgtaaagaatgagccttattcttgaaatgat--gactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
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tgtcgcttcactttctactttttttttagttcaacttgaaccttaccagttttacttc---aggtgtgaa-agtaagttttaatctcctaattatttcatatagGTGGGAAAAAATCTACTGGGGGAAACTGGCTTTCAGTAAGTCAGGGAATAGCAGAGGACGCATCTGATCTTGTTTCGGGTTTTGCTACTATTGGTGATGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatttccttttgtaaaccgtaaagaatgagccttattcttgaaatgatgactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
ttttgtaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatgtttcatgtgttttttatgccctgttatgcatctttctgagagatttccttttgtaaaccgtaaagaatgagccttattcttgaaatgatgactcagGTGGAAAACGAACAGCTGGGGGCAGTTGGCTATCTGTAAGTCAAGGCATTGCAGAGGATACCTCTGATCTGGTTTCTGGTTTTGCTACTGTTGGTGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - -catgtgt
- - - - - - - - - tatgccc
- - - - - - - - - - - - - - tatgcat
- - - - - - - - - - - - - - - - - -ctttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaagaa