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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgagcaatttttgtatgcttttccatactttacttttatgatccattgttctctcctttttaacacatgcttatatgttaaaccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGATTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAA

Basic information

species Vitis vinifera
transcript Vv01s0011g01080.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g01080.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA09G05510.1 (Glycine max), 3'ss of exon 6
gtattgagcaatttttgtatgcttttccatactttacttttatgatccattgttctctcctttttaacacatgcttatatgttaaaccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGATTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAA
|||  ||| | ||||| | |    ||   || | | |  || ||    |    |  |      |||||| ||     | |||||| |  |||  |||||  || ||  ||||||||||||||||| ||||| | ||||||  | || |||  |||||||||  |||| ||||| |||||||| || ||||||||||
gtaaggagaattttttttgtcaaatttgttagtctcccattgtg-cataaaacttacgatgcattaacaaat-----tgtgttaatct-catttagCACAGTGCTGCACCCCTTAAAATAAAGCGTCTTGCACATGATCCTCAAAGGTTCGCTTGGGCAGTAGGTATTGCACAGTCACGATGTATTAACATGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349826229|gb|FQ416034.1|FQ416034
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAAGCGC-TTGCTCGTGATCC
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAA-GCGCCTTGCTCGTGATCC
EST: gi|349830971|gb|FQ418255.1|FQ418255
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351025692|gb|FQ426706.1|FQ426706
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTNNNNNNNNGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|30327285|gb|CD010547.1|CD010547
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|30325264|gb|CD008526.1|CD008526
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|349824034|gb|FQ417421.1|FQ417421
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351019251|gb|FQ429411.1|FQ429411
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAACCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|349832506|gb|FQ421067.1|FQ421067
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAA-TAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|349821313|gb|FQ404445.1|FQ404445
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAAATAA-GCGCCTTGCTCGTGATCCAAATAG
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAA-TAAAGCGCCTTGCTCGTGATCCCAATAG
EST: gi|351053396|gb|FQ455732.1|FQ455732
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATA
EST: gi|32248332|gb|CD714151.1|CD714151
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351028541|gb|FQ444822.1|FQ444822
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAGCGCCTTGCTCGTGATCCCCATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351053071|gb|FQ456678.1|FQ456678
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351016333|gb|FQ446193.1|FQ446193
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCTCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAG
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAG
EST: gi|30328160|gb|CD011422.1|CD011422
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|32247267|gb|CD713086.1|CD713086
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
EST: gi|351013379|gb|FQ425410.1|FQ425410
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAA
EST: gi|351015737|gb|FQ431692.1|FQ431692
EST:     CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGG                         CACTCTGGTGTCCCCTTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA
genomic: CTATGAGAGATCAGCAACGCCGAGCTTCAGAATTTTGGGAAAAGAATTGGgtattgagca ... ccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatccattgttctctcctttttaacacatgcttatatgttaaaccacatacagCACTCTGGTGTCCCCCTTAAAATAAAGCGCCTTGCTCGTGATCCCAATAGATTCATTTGGGCAGTGAGTATAGCACAATCACGATGCATAAACATGCAAA
                    ttttaac  putative branch site (score: 2)
                                 ttatatgttaaa  TA-rich tract