Sequence
atgc intronic sequence ATGC exonic sequencegtagactgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacactttcttagaaattcaaaatatgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcagGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA01G07190.3 (Glycine max), 3'ss of exon 6
---------------gtagac-tgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatgga-tgttgggtttttggctgtaaatgttattgtggcacactt-tcttagaaattcaaaatatgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcagGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTG
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gtctgcttctctcatacaaacatgttcctttatcttattaattttgaactgaaatgtgcaatactagctctatgcagactgtcatatacttggattggcatat-gctgtttctctcttatctaatgattttgaaataatttttga--attatatttctctttgtcttgtcccatatgt------------tgcagGGATCAAATCTTGATAGCAATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTAG
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA02G13010.1 (Glycine max), 3'ss of exon 2
gtagactgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacactttcttag--aaattcaaaatatgt----ttaaatgacttta---ttcatgatttgatgataacgtatgcaaatctttactgtt-cagGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTG
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--------gtctgtgtctctcatacaaacatgttcctttatct-tacttattttgaactgaattgcgaagtactagctctatgcgg-actgtcatatacttggattggcatatgctgattctctcctatctaatgattctgatttttttaattatatttttctttat-cttgtcccatctgttgcagGGATCAAATCTTGATAGCTATGCAAAAATGTGGCGATTGGTTGCAGATCTTATGAATGACCTTG
upper sequence: Vv01s0011g00500.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G13770.2 (Arabidopsis thaliana), 3'ss of exon 5
gtagactgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacactttcttagaaattcaaaatatgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcagGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTG
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---------------------------------------------------gtgcctatg--tagcagattcttcccaatcataatacacatcgattctcttcccttttctttaagat---ttagattggttacgttctt-atttaatgggaac-tgt-------tctgttcttcagGGTTCCAACCTGGATAGCAATGCAAAAATGTGGCGCCTAGTTGCTGACCTTATGAATGATATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161708215|gb|FC057847.1|FC057847EST: CCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAG GGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTG
genomic: CCTAACTGGAATGCTTGGAGGAATTTTATTCACTTTTTACCAGgtagactgtt ... tactgttcagGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcagGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTG
tgataac putative branch site (score: 2)
tctttact putative PPT
tttattcatgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagactgttctttgctgttgtaatgactattagaaaatatttgtctttatttacttatggatgttgggtttttggctgtaaatgttattgtggcacactttcttagaaattcaaaatatgtttaaatgactttattcatgatttgatgataacgtatgcaaatctttactgttcagGGCTCAAACCTGGACAGCAATGCTAAAATGTGGCGATTGGTTGCAGATCTGATGAATGATCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT