Sequence
atgc intronic sequence ATGC exonic sequencegtaagcaaagtaatgtatagatatactctataactttcaatcgaatttcttggctgaatatgatgctaattccagGATCCGTGGGGAGGCTTGGATAGAAAAGATAAAGGAGATCTAAAGCTTGATCTCAAGAGCAGAGGTCTTTGTTTGGTTCCTATTTCATGTACTCCTCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA20G32520.1 (Glycine max), 3'ss of exon 6
------------------------gtaagcaaagtaatgtatagatatactctataact--ttcaatcgaatttcttggctgaatatgatgctaattccagGATCCGTGGGGAGGCTTGGATAGAAAAGATAAAGGAGATCTAAAGCTTGATCTCAAGAGCAGAGGTCTTTGTTTGGTTCCTATTTCATGTACTCCTCAAG
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gtaagaaagttgttcattccttttaaaagtctctcaagttttcactctcatccataattaaccctattaattgacattggttttcatgggattaatga-agGACCCATGGGGAAGCTTGGATAGAAAAGATAAGGAGGACACCAAGTTAGACCTTCGGAGCAGAGGTCTTTGTTTAGTTCCTACTTCATGTACTCCTCTAG
upper sequence: Vv01s0010g02070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GLYMA10G35040.1 (Glycine max), 3'ss of exon 6
-------------------gtaagcaaagtaatgtatagatatactct--ataactttcaatcgaatttcttggctgaata----tgatgct-----aattccagGATCCGTGGGGAGGCTTGGATAGAAAAG---ATAAAGGAGATCTAAAGCTTGATCTCAAGAGCAGAGGTCTTTGTTTGGTTCCTATTTCATGTACTCCTCAAG
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gtaagaaagttgttcgttcattttaaaagtctctcaagttttctctctcagcaataatcaattaaccctattaattaattggcattggttttcatgggattgaagGATCCATGGGGAAGCTTGGATAGAAAAGATCATAAGGAGGACACAAAGCTAGACCTTCGAAGCAGAGGTCTGTGTTTAGTTCCTACTTCATGTACTCCTC---
upper sequence: Vv01s0010g02070.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT1G31050.1 (Arabidopsis thaliana), 3'ss of exon 6
-----gtaagcaaagtaatgtatagat-atactctataactttcaatcgaatttcttggctgaatatgatgcta--------attccagGATCCGTGGGGAGGCTTGGATAGAAAAGAT-------AAAGGAGATCTAA--AGCTTGATCTCAAGAGCAGAGGTCTTTGTTTGGTTCCTATTTCATGTACTCCTCAAG
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gtaacgtttataaaatattttcttcatgacgttttagataatggaatctcttcagctaattaatcataatgtcatatgtatggttttagGATCCATGGGGGGGATGGGACAGAGAAGATCACAACAAAAGGGGACCGAAGCATCTTGATCTAAGGAGTAGAGGGCTTTGTTTGGTTCCTATTTCATATA--------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatactctataactttcaatcgaatttcttggctgaatatgatgctaattccagGATCCGTGGGGAGGCTTGGATAGAAAAGATAAAGGAGATCTAAAGCTTGATCTCAAGAGCAGAGGTCTTTGTTTGGTTCCTATTTCATGTACTCCTCAAG
tgctaat putative branch site (score: 2)
tataacttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcaaagtaatgtatagatatactctataactttcaatcgaatttcttggctgaatatgatgctaattccagGATCCGTGGGGAGGCTTGGATAGAAAAGATAAAGGAGATCTAAAGCTTGATCTCAAGAGCAGAGGTCTTTGTTTGGTTCCTATTTCATGTACTCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC