1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cagtattggtgtttctataacttaaattttattttaagtagtttttatctatcgccacatactaatctaaagttcttgctgatttgatgtttgaaaaaagGTGCAAGGAAAAGACCGTTTGGTGGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCG
species | Vitis vinifera |
transcript | Vv01s0010g01080.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGTGACAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAG GTGCAAGGAAAEST: gi|71869242|gb|DT018297.1|DT018297
genomic: TGTGTGTGAAAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAGgtattactga ... ttgaaaaaagGTGCAAGGAAA
EST: TGTGTGTGAAAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAG GTGCAAGGAAAAGACCGTTTGGTGGTAAAATGTGTTGGGGAGCAGCTCCAG
genomic: TGTGTGTGAAAATTGATTGGTTGGAACAGCTAAACCGTCAATATATTCAGgtattactga ... ttgaaaaaagGTGCAAGGAAAAGACCGTTTGGTGGTAAAATGTGTTGGGGAGCAGCTCCAG
tatctatcgccacatactaatctaaagttcttgctgatttgatgtttgaaaaaagGTGCAAGGAAAAGACCGTTTGGTGGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCG
tttgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtattggtgtttctataacttaaattttattttaagtagtttttatctatcgccacatactaatctaaagttcttgctgatttgatgtttgaaaaaagGTGCAAGGAAAAGACCGTTTGGTGGTAAAATGTGTTGGGGAGCAGCTCCAGTTGGAAGGTTCATATAGTCCTCGTACTTACATAGAACAAATTCAGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - tggtgtt
- - - - - - - - - aacttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgc