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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttccccttgtcatatatcttattttggcattttgaagttctgaatttcaaagggagatatatattgacacatgatttattgcagGATGTGATGCCCTTGCATGTGCG

Basic information

species Vitis vinifera
transcript Vv01s0010g00950.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351028084|gb|FQ425985.1|FQ425985
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|351043445|gb|FQ444045.1|FQ444045
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|349829684|gb|FQ421202.1|FQ421202
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|349824351|gb|FQ417738.1|FQ417738
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|110708043|gb|EE085132.1|EE085132
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|110694296|gb|EE071276.1|EE071276
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|351040557|gb|FQ434690.1|FQ434690
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|351014955|gb|FQ444244.1|FQ444244
EST:     AGCAAGGCGGACAAACTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|351029069|gb|FQ435269.1|FQ435269
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG
EST: gi|110687900|gb|EE065836.1|EE065836
EST:     AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATG                         GATGTGATGCCCTTGCATGTGCG
genomic: AGCAAGGCGGACAAATTCCTCTAGTCCATTGGGAGAACTTTTTGACCATGgtgatttccc ... tttattgcagGATGTGATGCCCTTGCATGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgaagttctgaatttcaaagggagatatatattgacacatgatttattgcagGATGTGATGCCCTTGCATGTGCG
                                tattgac  putative branch site (score: 2)
                         agatatatatt  TA-rich tract