Sequence
atgc intronic sequence ATGC exonic sequence...actcttggtggatcattttaattcatataattgatgacaagtatctactatattcaataacttctataagagaaaattgattttgtttacatcattgcagCCTGAACAATTGAAAAAGATATTTGAGCTTTGTGGATCTCCTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G64960.2 (Arabidopsis thaliana), 3'ss of exon 7
actcttggtggatcatttta--attcatataattgatgacaagtatctactatattcaataacttctataag-agaaaattgattttgtttacatcattgcagCCTGAACAATTGAAAAAGATATTTGAGCTTTGTGGATCTCCTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAG
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---gtcaggatttcatcttatgattatcgtggtgtgtgtta--ttacagtgttctttgatgatgtttccacttagcgttttagtcatatttttttctttccagAATGAACAATTGAATAAGATTTATGAGCTTTGTGGATCACCTGATGAAAGCAACTGGCCTGGAGTTTCCAAGATGCCTTGGTATAACCAAATGAAATCAT
upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: AT5G10270.1 (Arabidopsis thaliana), 3'ss of exon 8
---actcttggtggatcattttaattcatataattgatgacaagtatctactatattcaataacttctataagagaaaattgattttgtttacatcattgcagCCTGAACAATTGAAAAAGATATTTGAGCTTTGTGGATCTCCTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAG
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tttgcattatatcatgtatacaaaatggtatagacgcagttatgtatacatgttatt-gataatctcaaaaaaatatgtgccatctc--ctacattgtttcagCAAGAACAATTGAACAAGATATTTGAGCTTTGTGGATCACCTGATGAAAAACTTTGGCCTGGGGTTTCCAAGATGCCTTGGTTCAACAATTTCAAGCCTG
upper sequence: Vv00s0805g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: PP1S3_535V6.2 (Physcomitrella patens), 3'ss of exon 6
actcttggtggatcatt-ttaattcatataattgatgacaagtatctactatattcaataact-tctataagagaaaattg-attttgtttacatcattgcagCCTGAACAATTGAAAAAGATATTTGAGCTTTGTGGATCTCCTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAG
||| | || || ||| || | | | | | | | ||| | ||| | | | || | ||| | | ||||| ||||| || |||| || | || |||||||| ||||||||||||| |||||||||| |||| || | |||| || || | ||||| || |
-taattgactaagtatcctttgttctgatcctcgg-gctttttcattgttgaaactaatggttctctgttcgtctctaatgcgatgcatttgc-tggctgcagAGCGAACAGTTCCAAAAAATCTGCGAACTTTGTGGGTCTCCTGATGAGACCAACTGGCCTCGTGTCAGTCAGTTGCCTTACTACAATCAATTCAAGCCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tactatattcaataacttctataagagaaaattgattttgtttacatcattgcagCCTGAACAATTGAAAAAGATATTTGAGCTTTGTGGATCTCCTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAG
aaaattgattttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actcttggtggatcattttaattcatataattgatgacaagtatctactatattcaataacttctataagagaaaattgattttgtttacatcattgcagCCTGAACAATTGAAAAAGATATTTGAGCTTTGTGGATCTCCTGATGAGAACAACTGGCCTGGTGTTTCCAAGATCCCTTGGTATAACAATTTCAAACCAG
- - -tggtgga
- - - - - - - - - - - - - - - -tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - caataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaat