1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cactaaaaagtatatctgaagaatgattggaactagtatgatttgcatattaaaggagctgtccctgttctagaggataatgcactttgtttttgtgcagGCTATTCACAAACTCACAGAATACTTGAGTTTCCAACTGAGGAATGTTGCAGGGGAACTTGTAGATGCATTTAATCTTCCAGATCATGTTACTCGTGCCC
species | Vitis vinifera |
transcript | Vv00s0662g00010.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACATAGGAACCTACCGCATTGTAGATTATGTTGCCCCCAACAAGGCAAAG GCTATTCACAAACTCACAGAATACTTEST: gi|33404010|gb|CF209637.1|CF209637
genomic: ACATAGGAACCTACCGCATTGTAGATTATGTTGCCCCCAACAAGGCAAAGgtatttcaaa ... ttttgtgcagGCTATTCACAAACTCACAGAATACTT
EST: ACATAGGAACCTACCGCATTGTAGATTATGTTGCCCCCAACAAGGCAAAG GCTATTCACAAACTCACAGAATACTTGAGTTTCCAACTGAGGAATGTTGCAEST: gi|18459311|gb|BM437589.1|BM437589
genomic: ACATAGGAACCTACCGCATTGTAGATTATGTTGCCCCCAACAAGGCAAAGgtatttcaaa ... ttttgtgcagGCTATTCACAAACTCACAGAATACTTGAGTTTCCAACTGAGGAATGTTGCA
EST: ACATAGGAACCTACCGCATTGTAGATTATGTTGCCCCCAACAAGGCAAAG GCTATTCACAAACTCACAGAATACTTGAGTTTCCAACTGAGGAATGTTGCA
genomic: ACATAGGAACCTACCGCATTGTAGATTATGTTGCCCCCAACAAGGCAAAGgtatttcaaa ... ttttgtgcagGCTATTCACAAACTCACAGAATACTTGAGTTTCCAACTGAGGAATGTTGCA
catattaaaggagctgtccctgttctagaggataatgcactttgtttttgtgcagGCTATTCACAAACTCACAGAATACTTGAGTTTCCAACTGAGGAATGTTGCAGGGGAACTTGTAGATGCATTTAATCTTCCAGATCATGTTACTCGTGCCC
ctttgttttt CT-rich tract
tttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactaaaaagtatatctgaagaatgattggaactagtatgatttgcatattaaaggagctgtccctgttctagaggataatgcactttgtttttgtgcagGCTATTCACAAACTCACAGAATACTTGAGTTTCCAACTGAGGAATGTTGCAGGGGAACTTGTAGATGCATTTAATCTTCCAGATCATGTTACTCGTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - -aaaagta
- - - - - - - - - - - -tgattgg
- - - - - - - - - - - - - - - - - - - - - - - - - taaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgcac