Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaaaaaaaaccaaaaaaaatgacctggtgtagatgctgaagcaatatatttcattccaattttgttgatgatatgtttgattgcttgtttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTATGGTGGTCGTGGTAGGGGTCGTGGCCGTGGTACAAGAGGAGGATTTGCAG

Basic information

species Vitis vinifera
transcript Vv00s0620g00020.t01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os01g52390.1 (Oryza sativa), 3'ss of exon 5
ataaaaaaaaaccaaaaaaaatgacctggtgtagatgctga-agcaatatatttcattccaattttgttga-tgatatgtttgattgcttg--tttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTATGGTGGTCGTGGTAGGGGTCGTGGCCGTGGTACAAGAGGAGGATTTGCAG
         ||  |    | ||  |  | | | |    ||| |||||   | || ||             | | |  | | | ||   ||   ||| |||  ||||||| ||||| ||||||||||||||||| || ||||| || ||||||||||| || |||||| | ||  | || |||||     | || ||   || | 
----ggtgtaattattggatattcctagattttgcgattgatagcaactcaatttatcttggaaaaaaaaactcaggtttctaatctgttaaattttgttccagTCTGTGAGCATCAATGAGTTCCTGAAGCCTGCGGAAGGAGAAAGGTACTATGGCGGCCGTGGTCGTGGAAGGGGGCGTGGAGATCGTGGCGGTCGTGGAT

upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: LOC_Os05g45660.2 (Oryza sativa), 3'ss of exon 5
--ataaaaaaaaaccaaaaaaaatgacctggtgtagatgctgaagcaatatatttca-ttccaattttgttgatgatatgtttgattgcttgtttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTATGGTGGTCGTGGTAGGGGTCGTGGCCGTGGTACAAGAGGAGGATTTGCAG
   |    |      |      |||   |||||       | |    | ||  || | ||      |   || | |  || |||   |    |||  ||  ||||||| ||||| || |||||||| || ||||||||||| |||||||||||||| || |||||| | ||  | ||||| ||     | || || ||    |
atctgttcatttgggattcttcatgctttggtgctttcaattagaagaaatgctttaattatgtactcagtgtttac-tgattgggggtcaattt--tttcagTCTGTGAGCATCAACGAGTTCCTAAAACCAGCTGAAGGAGAGAGGTACTATGGCGGCCGTGGTCGTGGCAGGGGCCGCGGGGATCGTGGCGGTTTCAGGG

upper sequence: Vv00s0620g00020.t01 (Vitis vinifera), 3'ss of exon 6
lower sequence: GRMZM2G464401_T01 (Zea mays), 3'ss of exon 5
ataaaaaaaaaccaaaaaaaatgacctggtgtagatgctgaagcaatatatttcattccaattttgttgat-gatatgtttgattgcttgtttggttgt-------agTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTATGGTGGTCGTGGTAGGGGTCGTGGCCGTGGTACAAGAGGAGGATTTGCAG--
     | | | |  | |    | ||||| |  ||   ||||   |||     ||| |    |||   |||  |  |||| || ||  |  |||  ||         ||||  | ||||| || |||||| |||||||||||||||| || |||||||||     | ||||  | || |||||  | ||  |    || || |  |  |  
---gtatatatctgatatttttcacctgcttcagt--ctgatataatcagagtcactgttgtttccctgaccgtcatgtctgttttatgttttccttcctctctcaagTCCCTGAGCATCAACGAGTTCTTGAAGCCAGCTGAAGGCGAAAGGTACTATAACCCTAGTGGCCGTGGCCGTGGTAGGGG--CCGTGGGGGGTTCCGTGGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77587239|gb|DV222753.1|DV222753
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|352768009|gb|FQ467408.1|FQ467408
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|352791165|gb|FQ477492.1|FQ477492
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|77577322|gb|DV217376.1|DV217376
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|37188106|gb|CF607457.1|CF607457
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110381092|gb|EC946407.1|EC946407
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|37185967|gb|CF605320.1|CF605320
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110359128|gb|EC920107.1|EC920107
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110723332|gb|EE100522.1|EE100522
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|34319306|gb|CF372060.1|CF372060
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|83277446|gb|DV941454.1|DV941454
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110370201|gb|EC929090.1|EC929090
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110369192|gb|EC933344.1|EC933344
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|87584370|gb|DY473572.1|DY473572
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|71879053|gb|DT028108.1|DT028108
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|87584797|gb|DY473820.1|DY473820
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110398617|gb|EC965086.1|EC965086
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|45771149|gb|CN007001.1|CN007001
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110725585|gb|EE102258.1|EE102258
EST:     NAAAGGATAAACGTAAAGAGCTTGCTGACNAAGAAGAGAGAGCCNAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGGAGAG-TACTA
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGG-AGAGGTACTA
EST: gi|110367692|gb|EC931641.1|EC931641
EST:     GCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: GCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110732545|gb|EE107924.1|EE107924
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110717666|gb|EE093720.1|EE093720
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110691388|gb|EE069434.1|EE069434
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110357737|gb|EC921443.1|EC921443
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|45770427|gb|CN006279.1|CN006279
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110701567|gb|EE079283.1|EE079283
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110368329|gb|EC932301.1|EC932301
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110693297|gb|EE069415.1|EE069415
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|34543489|gb|CF511721.1|CF511721
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|352763478|gb|FQ473181.1|FQ473181
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110684761|gb|EE062412.1|EE062412
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|33405741|gb|CF211368.1|CF211368
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|34543575|gb|CF511807.1|CF511807
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|30328437|gb|CD011699.1|CD011699
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110688083|gb|EE066227.1|EE066227
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAAAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110702828|gb|EE079139.1|EE079139
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|352795048|gb|FQ477158.1|FQ477158
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAGGAAGAGAGAGCCAAAAAG                         TCTGTCGGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110399338|gb|EC965841.1|EC965841
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|30320975|gb|CD004237.1|CD004237
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110685092|gb|EE063119.1|EE063119
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110379665|gb|EC944877.1|EC944877
EST:     TGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: TGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|27579184|gb|CB001879.1|CB001879
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|87584682|gb|DY473753.1|DY473753
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|110425301|gb|EC991684.1|EC991684
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|83277309|gb|DV941317.1|DV941317
EST:     GAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
EST: gi|30320328|gb|CD003590.1|CD003590
EST:     AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAG                         TCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT
genomic: AAAAGGATAAACGTAAAGAGCTTGCTGACAAAGAAGAGAGAGCCAAAAAGgtttgtggtt ... ttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatttcattccaattttgttgatgatatgtttgattgcttgtttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTATGGTGGTCGTGGTAGGGGTCGTGGCCGTGGTACAAGAGGAGGATTTGCAG
                                        cttgttt  CT-rich tract
              aattttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ataaaaaaaaaccaaaaaaaatgacctggtgtagatgctgaagcaatatatttcattccaattttgttgatgatatgtttgattgcttgtttggttgtagTCTGTCAGCATAAATGAGTTCCTGAAGCCAGCTGAAGGGGAGAGGTACTATGGTGGTCGTGGTAGGGGTCGTGGCCGTGGTACAAGAGGAGGATTTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
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