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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttgtgtttgtagcttcttgtacttcatattgtagtgccttttatgcattgtacgcattttcatctgacacaccttgcatgatacactattttttcttcagATATCAAAGCTCTGTTGCTTTAAAGTATCCACTCTTTGTATCCCAG

Basic information

species Vitis vinifera
transcript Vv00s0585g00030.t01
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855597|gb|DT004652.1|DT004652
EST:     GCATGCAATCGTGCTGATTATCTGGAGAGGACTATTAAGTCAGTCTTGAA                         ATATCAAAGCTCTGTTGCTTTAAAGTATCCACTCTTTGTATCCCAG
genomic: GCATGCAATCGTGCTGATTATCTGGAGAGGACTATTAAGTCAGTCTTGAAgtatgttttg ... ttttcttcagATATCAAAGCTCTGTTGCTTTAAAGTATCCACTCTTTGTATCCCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattgtacgcattttcatctgacacaccttgcatgatacactattttttcttcagATATCAAAGCTCTGTTGCTTTAAAGTATCCACTCTTTGTATCCCAG
                atctgac  putative branch site (score: 3)
                                      cactattttttcttc  putative PPT
                                   atacactatttttt  TA-rich tract